Literature DB >> 24047874

An energetic model for macromolecules unfolding in stretching experiments.

D De Tommasi1, N Millardi, G Puglisi, G Saccomandi.   

Abstract

We propose a simple approach, based on the minimization of the total (entropic plus unfolding) energy of a two-state system, to describe the unfolding of multi-domain macromolecules (proteins, silks, polysaccharides, nanopolymers). The model is fully analytical and enlightens the role of the different energetic components regulating the unfolding evolution. As an explicit example, we compare the analytical results with a titin atomic force microscopy stretch-induced unfolding experiment showing the ability of the model to quantitatively reproduce the experimental behaviour. In the thermodynamic limit, the sawtooth force-elongation unfolding curve degenerates to a constant force unfolding plateau.

Entities:  

Keywords:  biopolymers; macromolecule mechanics; macromolecules unfolding; protein stability; titin

Mesh:

Substances:

Year:  2013        PMID: 24047874      PMCID: PMC3785837          DOI: 10.1098/rsif.2013.0651

Source DB:  PubMed          Journal:  J R Soc Interface        ISSN: 1742-5662            Impact factor:   4.118


  42 in total

Review 1.  Protein folding theory: from lattice to all-atom models.

Authors:  L Mirny; E Shakhnovich
Journal:  Annu Rev Biophys Biomol Struct       Date:  2001

2.  PEVK domain of titin: an entropic spring with actin-binding properties.

Authors:  Wolfgang A Linke; Michael Kulke; Hongbin Li; Setsuko Fujita-Becker; Ciprian Neagoe; Dietmar J Manstein; Mathias Gautel; Julio M Fernandez
Journal:  J Struct Biol       Date:  2002 Jan-Feb       Impact factor: 2.867

3.  Reverse engineering of the giant muscle protein titin.

Authors:  Hongbin Li; Wolfgang A Linke; Andres F Oberhauser; Mariano Carrion-Vazquez; Jason G Kerkvliet; Hui Lu; Piotr E Marszalek; Julio M Fernandez
Journal:  Nature       Date:  2002-08-29       Impact factor: 49.962

4.  Pulling geometry defines the mechanical resistance of a beta-sheet protein.

Authors:  David J Brockwell; Emanuele Paci; Rebecca C Zinober; Godfrey S Beddard; Peter D Olmsted; D Alastair Smith; Richard N Perham; Sheena E Radford
Journal:  Nat Struct Biol       Date:  2003-08-17

5.  The inherent structure landscape of a protein.

Authors:  Naoko Nakagawa; Michel Peyrard
Journal:  Proc Natl Acad Sci U S A       Date:  2006-03-27       Impact factor: 11.205

6.  Secondary and tertiary structure elasticity of titin Z1Z2 and a titin chain model.

Authors:  Eric H Lee; Jen Hsin; Olga Mayans; Klaus Schulten
Journal:  Biophys J       Date:  2007-05-11       Impact factor: 4.033

7.  Single-molecule experiments in biological physics: methods and applications.

Authors:  F Ritort
Journal:  J Phys Condens Matter       Date:  2006-07-25       Impact factor: 2.333

8.  Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules.

Authors:  S B Smith; Y Cui; C Bustamante
Journal:  Science       Date:  1996-02-09       Impact factor: 47.728

9.  The molecular elasticity of the extracellular matrix protein tenascin.

Authors:  A F Oberhauser; P E Marszalek; H P Erickson; J M Fernandez
Journal:  Nature       Date:  1998-05-14       Impact factor: 49.962

Review 10.  Titin/connectin and nebulin: giant protein rulers of muscle structure and function.

Authors:  K Wang
Journal:  Adv Biophys       Date:  1996
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  3 in total

Review 1.  Multi-scale modelling of rubber-like materials and soft tissues: an appraisal.

Authors:  G Puglisi; G Saccomandi
Journal:  Proc Math Phys Eng Sci       Date:  2016-03       Impact factor: 2.704

2.  Stick-slip kinetics in a bistable bar immersed in a heat bath.

Authors:  Chuanpeng Sun; Prashant K Purohit
Journal:  Int J Solids Struct       Date:  2019-07-31       Impact factor: 3.900

3.  Unveiling the influence of device stiffness in single macromolecule unfolding.

Authors:  G Florio; G Puglisi
Journal:  Sci Rep       Date:  2019-03-21       Impact factor: 4.379

  3 in total

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