Literature DB >> 20138503

Understanding biology by stretching proteins: recent progress.

Albert Galera-Prat1, Angel Gómez-Sicilia, Andres F Oberhauser, Marek Cieplak, Mariano Carrión-Vázquez.   

Abstract

Single molecule manipulation techniques combined with molecular dynamics simulations and protein engineering have enabled, during the last decade, the mechanical properties of proteins to be studied directly, thereby giving birth to the field of protein nanomechanics. Recent data obtained from such techniques have helped gain insight into the structural bases of protein resistance against forced unfolding, as well as revealing structural motifs involved in mechanical stability. Also, important technical developments have provided new perspectives into protein folding. Eventually, new and exciting data have shown that mechanical properties are key factors in cell signaling and pathologies, and have been used to rationally tune these properties in a variety of proteins. Crown Copyright 2009. Published by Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 20138503      PMCID: PMC2826537          DOI: 10.1016/j.sbi.2010.01.003

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  52 in total

1.  Engineering proteins with novel mechanical properties by recombination of protein fragments.

Authors:  Deepak Sharma; Yi Cao; Hongbin Li
Journal:  Angew Chem Int Ed Engl       Date:  2006-08-25       Impact factor: 15.336

2.  Protein folding in a force clamp.

Authors:  Marek Cieplak; P Szymczak
Journal:  J Chem Phys       Date:  2006-05-21       Impact factor: 3.488

3.  A functional single-molecule binding assay via force spectroscopy.

Authors:  Yi Cao; M M Balamurali; Deepak Sharma; Hongbin Li
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-25       Impact factor: 11.205

4.  Direct observation of active protein folding using lock-in force spectroscopy.

Authors:  Michael Schlierf; Felix Berkemeier; Matthias Rief
Journal:  Biophys J       Date:  2007-08-17       Impact factor: 4.033

5.  The effects of macromolecular crowding on the mechanical stability of protein molecules.

Authors:  Jian-Min Yuan; Chia-Lin Chyan; Huan-Xiang Zhou; Tse-Yu Chung; Haibo Peng; Guanghui Ping; Guoliang Yang
Journal:  Protein Sci       Date:  2008-09-09       Impact factor: 6.725

Review 6.  Discovery through the computational microscope.

Authors:  Eric H Lee; Jen Hsin; Marcos Sotomayor; Gemma Comellas; Klaus Schulten
Journal:  Structure       Date:  2009-10-14       Impact factor: 5.006

7.  A single-molecule perspective on the role of solvent hydrogen bonds in protein folding and chemical reactions.

Authors:  Lorna Dougan; Ainavarapu Sri Rama Koti; Georgi Genchev; Hui Lu; Julio M Fernandez
Journal:  Chemphyschem       Date:  2008-12-22       Impact factor: 3.102

8.  Pathogenic mutations shift the equilibria of alpha-synuclein single molecules towards structured conformers.

Authors:  Marco Brucale; Massimo Sandal; Selena Di Maio; Aldo Rampioni; Isabella Tessari; Laura Tosatto; Marco Bisaglia; Luigi Bubacco; Bruno Samorì
Journal:  Chembiochem       Date:  2009-01-05       Impact factor: 3.164

9.  Stretching single talin rod molecules activates vinculin binding.

Authors:  Armando del Rio; Raul Perez-Jimenez; Ruchuan Liu; Pere Roca-Cusachs; Julio M Fernandez; Michael P Sheetz
Journal:  Science       Date:  2009-01-30       Impact factor: 63.714

10.  Identification of a mechanical rheostat in the hydrophobic core of protein L.

Authors:  David P Sadler; Eva Petrik; Yukinori Taniguchi; James R Pullen; Masaru Kawakami; Sheena E Radford; David J Brockwell
Journal:  J Mol Biol       Date:  2009-08-13       Impact factor: 5.469

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  21 in total

1.  Dynamics of protein folding and cofactor binding monitored by single-molecule force spectroscopy.

Authors:  Yi Cao; Hongbin Li
Journal:  Biophys J       Date:  2011-10-19       Impact factor: 4.033

2.  Functional modes and residue flexibility control the anisotropic response of guanylate kinase to mechanical stress.

Authors:  Sophie Sacquin-Mora; Olivier Delalande; Marc Baaden
Journal:  Biophys J       Date:  2010-11-17       Impact factor: 4.033

3.  Engineering proteins with enhanced mechanical stability by force-specific sequence motifs.

Authors:  Wenzhe Lu; Surendra S Negi; Andres F Oberhauser; Werner Braun
Journal:  Proteins       Date:  2012-02-10

4.  Single-molecule studies on PolySUMO proteins reveal their mechanical flexibility.

Authors:  Hema Chandra Kotamarthi; Riddhi Sharma; Sri Rama Koti Ainavarapu
Journal:  Biophys J       Date:  2013-05-21       Impact factor: 4.033

5.  Effects of ligand binding on the mechanical stability of protein GB1 studied by steered molecular dynamics simulation.

Authors:  Ji-Guo Su; Shu-Xin Zhao; Xiao-Feng Wang; Chun-Hua Li; Jing-Yuan Li
Journal:  J Mol Model       Date:  2016-07-22       Impact factor: 1.810

6.  Biomechanical defects and rescue of cardiomyocytes expressing pathologic nuclear lamins.

Authors:  Erik Laurini; Valentina Martinelli; Thomas Lanzicher; Luca Puzzi; Daniele Borin; Suet Nee Chen; Carlin S Long; Patrice Lee; Luisa Mestroni; Matthew R G Taylor; Orfeo Sbaizero; Sabrina Pricl
Journal:  Cardiovasc Res       Date:  2018-05-01       Impact factor: 10.787

7.  Single-molecule experiments reveal the flexibility of a Per-ARNT-Sim domain and the kinetic partitioning in the unfolding pathway under force.

Authors:  Xiang Gao; Meng Qin; Puguang Yin; Junyi Liang; Jun Wang; Yi Cao; Wei Wang
Journal:  Biophys J       Date:  2012-05-02       Impact factor: 4.033

8.  Ligand-modulated parallel mechanical unfolding pathways of maltose-binding proteins.

Authors:  Vasudha Aggarwal; S Rajendra Kulothungan; M M Balamurali; S R Saranya; Raghavan Varadarajan; Sri Rama Koti Ainavarapu
Journal:  J Biol Chem       Date:  2011-06-08       Impact factor: 5.157

9.  Molecular dynamics-based simulation of trace amine membrane permeability.

Authors:  Mark D Berry; Jarrod Nickel; Mithila R Shitut; Bruno Tomberli
Journal:  J Neural Transm (Vienna)       Date:  2011-01-06       Impact factor: 3.575

10.  Tracking unfolding and refolding reactions of single proteins using atomic force microscopy methods.

Authors:  Paul J Bujalowski; Andres F Oberhauser
Journal:  Methods       Date:  2013-03-20       Impact factor: 3.608

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