Literature DB >> 12581646

The Oligomeric states of Haloarcula marismortui malate dehydrogenase are modulated by solvent components as shown by crystallographic and biochemical studies.

Adriana Irimia1, Christine Ebel, Dominique Madern, Stéphane B Richard, Lawrence W Cosenza, Giuseppe Zaccaï, Frédéric M D Vellieux.   

Abstract

The three-dimensional crystal structure of the (R207S, R292S) mutant of malate dehydrogenase from Haloarcula marismortui was solved at 1.95A resolution in order to determine the role of salt bridges and solvent ions in halophilic adaptation and quaternary structure stability. The mutations, located at the dimer-dimer interface, disrupt two inter-dimeric salt bridge clusters that are essential for wild-type tetramer stabilisation. Previous experiments in solution, performed on the double mutant, had shown a tetrameric structure in 4M NaCl, which dissociated into active dimers in 2M NaCl. In order to establish if the active dimeric form is a product of the mutation, or if it also exists in the wild-type protein, complementary studies were performed on the wild-type enzyme by analytical centrifugation and small angle neutron scattering experiments. They showed the existence of active dimers in NaF, KF, Na(2)SO(4), even in the absence of NADH, and in the presence of NADH at concentrations of NaCl below 0.3M. The crystal structure shows a tetramer that, in the absence of the salt bridge clusters, appears to be stabilized by a network of ordered water molecules and by Cl(-) binding at the dimer-dimer interface. The double mutant and wild-type dimer folds are essentially identical (the r.m.s. deviation between equivalent C(alpha) positions is 0.39A). Chloride ions are also observed at the monomer-monomer interfaces of the mutant, contributing to the stability of each dimer against low salt dissociation. Our results support the hypothesis that extensive binding of water and salt is an important feature of adaptation to a halophilic environment.

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Year:  2003        PMID: 12581646     DOI: 10.1016/s0022-2836(02)01450-x

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  19 in total

Review 1.  The effect of water on protein dynamics.

Authors:  G Zaccai
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2004-08-29       Impact factor: 6.237

2.  Methanoarchaeal sulfolactate dehydrogenase: prototype of a new family of NADH-dependent enzymes.

Authors:  Adriana Irimia; Dominique Madern; Giuseppe Zaccaï; Frédéric M D Vellieux
Journal:  EMBO J       Date:  2004-03-11       Impact factor: 11.598

3.  Pcal_1699, an extremely thermostable malate dehydrogenase from hyperthermophilic archaeon Pyrobaculum calidifontis.

Authors:  Ghazaleh Gharib; Naeem Rashid; Qamar Bashir; Qura-Tul Ann Afza Gardner; Muhammad Akhtar; Tadayuki Imanaka
Journal:  Extremophiles       Date:  2015-10-28       Impact factor: 2.395

4.  Three-dimensional structure of a halotolerant algal carbonic anhydrase predicts halotolerance of a mammalian homolog.

Authors:  Lakshmanane Premkumar; Harry M Greenblatt; Umesh K Bageshwar; Tatyana Savchenko; Irena Gokhman; Joel L Sussman; Ada Zamir
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-13       Impact factor: 11.205

Review 5.  Halophiles and their enzymes: negativity put to good use.

Authors:  Shiladitya DasSarma; Priya DasSarma
Journal:  Curr Opin Microbiol       Date:  2015-06-09       Impact factor: 7.934

6.  Neutron scattering reveals extremely slow cell water in a Dead Sea organism.

Authors:  Moeava Tehei; Bruno Franzetti; Kathleen Wood; Frank Gabel; Elisa Fabiani; Marion Jasnin; Michaela Zamponi; Dieter Oesterhelt; Giuseppe Zaccai; Margaret Ginzburg; Ben-Zion Ginzburg
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-10       Impact factor: 11.205

7.  Molecular adaptation and salt stress response of Halobacterium salinarum cells revealed by neutron spectroscopy.

Authors:  Pierre Vauclare; Vincent Marty; Elisa Fabiani; Nicolas Martinez; Marion Jasnin; Frank Gabel; Judith Peters; Giuseppe Zaccai; Bruno Franzetti
Journal:  Extremophiles       Date:  2015-09-16       Impact factor: 2.395

8.  Analysis of quaternary structure of a [LDH-like] malate dehydrogenase of Plasmodium falciparum with oligomeric mutants.

Authors:  Anupam Pradhan; Prasenjit Mukherjee; Abhai K Tripathi; Mitchell A Avery; Larry A Walker; Babu L Tekwani
Journal:  Mol Cell Biochem       Date:  2009-01-29       Impact factor: 3.396

9.  Salt-dependent studies of NADP-dependent isocitrate dehydrogenase from the halophilic archaeon Haloferax volcanii.

Authors:  Dominique Madern; Mónica Camacho; Adoración Rodríguez-Arnedo; María-José Bonete; Giuseppe Zaccai
Journal:  Extremophiles       Date:  2004-06-18       Impact factor: 2.395

10.  Characterization of alcohol dehydrogenase from the haloalkaliphilic archaeon Natronomonas pharaonis.

Authors:  Yi Cao; Li Liao; Xue-wei Xu; Aharon Oren; Ce Wang; Xu-feng Zhu; Min Wu
Journal:  Extremophiles       Date:  2008-01-10       Impact factor: 2.395

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