Literature DB >> 12547763

Translocation of rodlike polymers through membrane channels.

A M Berezhkovskii1, I V Gopich.   

Abstract

A theory of channel-facilitated transport of long rodlike macromolecules through thin membranes under the influence of a driving force of arbitrary strength is developed. Analytic expressions are derived for the translocation probability and the Laplace transform of the probability density of time that a macromolecule spends in the channel. We also derive expressions for the (conditional) probability densities of time spent in the channel by translocating and nontranslocating (returning back) macromolecules. These results are used to study how the distribution of the macromolecule lifetime in the channel depends on a polymer chain length and the driving force. It is shown that depending on the values of the parameters, the lifetime probability density may have one or two peaks. Our theory is a generalization of the theory developed by Lubensky and Nelson, who were inspired by recent experiments on driven translocation of single-stranded RNA and DNA molecules through single channels in narrow membranes.

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Year:  2003        PMID: 12547763      PMCID: PMC1302659          DOI: 10.1016/S0006-3495(03)74898-X

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  16 in total

1.  Driven polymer translocation through a narrow pore.

Authors:  D K Lubensky; D R Nelson
Journal:  Biophys J       Date:  1999-10       Impact factor: 4.033

2.  Translocation of a confined polymer through a hole.

Authors:  M Muthukumar
Journal:  Phys Rev Lett       Date:  2001-04-02       Impact factor: 9.161

3.  Passive entry of a DNA molecule into a small pore.

Authors:  P G de Gennes
Journal:  Proc Natl Acad Sci U S A       Date:  1999-06-22       Impact factor: 11.205

Review 4.  Ion channels as molecular coulter counters to probe metabolite transport.

Authors:  S M Bezrukov
Journal:  J Membr Biol       Date:  2000-03-01       Impact factor: 1.843

5.  Polymer Translocation through a Pore in a Membrane.

Authors: 
Journal:  Phys Rev Lett       Date:  1996-07-22       Impact factor: 9.161

6.  Anomalous dynamics of translocation.

Authors:  Jeffrey Chuang; Yacov Kantor; Mehran Kardar
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2001-12-14

7.  Driven DNA transport into an asymmetric nanometer-scale pore.

Authors:  S E Henrickson; M Misakian; B Robertson; J J Kasianowicz
Journal:  Phys Rev Lett       Date:  2000-10-02       Impact factor: 9.161

8.  What drives the translocation of proteins?

Authors:  S M Simon; C S Peskin; G F Oster
Journal:  Proc Natl Acad Sci U S A       Date:  1992-05-01       Impact factor: 11.205

9.  Spontaneous translocation of a polymer across a curved membrane.

Authors: 
Journal:  Phys Rev Lett       Date:  1995-03-13       Impact factor: 9.161

10.  Characterization of individual polynucleotide molecules using a membrane channel.

Authors:  J J Kasianowicz; E Brandin; D Branton; D W Deamer
Journal:  Proc Natl Acad Sci U S A       Date:  1996-11-26       Impact factor: 11.205

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  14 in total

1.  Translocation of a single-stranded DNA through a conformationally changing nanopore.

Authors:  O Flomenbom; J Klafter
Journal:  Biophys J       Date:  2004-06       Impact factor: 4.033

2.  Nucleic acid transport through carbon nanotube membranes.

Authors:  In-Chul Yeh; Gerhard Hummer
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-09       Impact factor: 11.205

3.  Theory of capture rate in polymer translocation.

Authors:  M Muthukumar
Journal:  J Chem Phys       Date:  2010-05-21       Impact factor: 3.488

4.  Computer simulation of polypeptide translocation through a nanopore.

Authors:  Andrzej Sikorski; Piotr Romiszowski
Journal:  J Mol Model       Date:  2005-04-02       Impact factor: 1.810

5.  Molecular transport through channels and pores: effects of in-channel interactions and blocking.

Authors:  Wolfgang R Bauer; Walter Nadler
Journal:  Proc Natl Acad Sci U S A       Date:  2006-07-21       Impact factor: 11.205

6.  Extracting kinetics from single-molecule force spectroscopy: nanopore unzipping of DNA hairpins.

Authors:  Olga K Dudko; Jérôme Mathé; Attila Szabo; Amit Meller; Gerhard Hummer
Journal:  Biophys J       Date:  2007-03-23       Impact factor: 4.033

7.  Molecular Dynamics simulation of a polymer chain translocating through a nanoscopic pore: hydrodynamic interactions versus pore radius.

Authors:  M G Gauthier; G W Slater
Journal:  Eur Phys J E Soft Matter       Date:  2008-01-31       Impact factor: 1.890

8.  Mechanism of KCl enhancement in detection of nonionic polymers by nanopore sensors.

Authors:  Claudio G Rodrigues; Dijanah C Machado; Sérgio F Chevtchenko; Oleg V Krasilnikov
Journal:  Biophys J       Date:  2008-09-19       Impact factor: 4.033

9.  DNA Sensing using Nano-crystalline Surface Enhanced Al(2)O(3) Nanopore Sensors.

Authors:  B M Venkatesan; A B Shah; J M Zuo; R Bashir
Journal:  Adv Funct Mater       Date:  2010-02-25       Impact factor: 18.808

10.  Partitioning of individual flexible polymers into a nanoscopic protein pore.

Authors:  Liviu Movileanu; Stephen Cheley; Hagan Bayley
Journal:  Biophys J       Date:  2003-08       Impact factor: 4.033

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