Literature DB >> 12535763

Using noise signature to optimize spike-sorting and to assess neuronal classification quality.

Christophe Pouzat1, Ofer Mazor, Gilles Laurent.   

Abstract

We have developed a simple and expandable procedure for classification and validation of extracellular data based on a probabilistic model of data generation. This approach relies on an empirical characterization of the recording noise. We first use this noise characterization to optimize the clustering of recorded events into putative neurons. As a second step, we use the noise model again to assess the quality of each cluster by comparing the within-cluster variability to that of the noise. This second step can be performed independently of the clustering algorithm used, and it provides the user with quantitative as well as visual tests of the quality of the classification.

Mesh:

Year:  2002        PMID: 12535763     DOI: 10.1016/s0165-0270(02)00276-5

Source DB:  PubMed          Journal:  J Neurosci Methods        ISSN: 0165-0270            Impact factor:   2.390


  91 in total

1.  Classification of odorants across layers in locust olfactory pathway.

Authors:  Pavel Sanda; Tiffany Kee; Nitin Gupta; Mark Stopfer; Maxim Bazhenov
Journal:  J Neurophysiol       Date:  2016-02-10       Impact factor: 2.714

2.  Time-dependent activation of feed-forward inhibition in a looming-sensitive neuron.

Authors:  Fabrizio Gabbiani; Ivan Cohen; Gilles Laurent
Journal:  J Neurophysiol       Date:  2005-05-31       Impact factor: 2.714

3.  Robustness of the significance of spike synchrony with respect to sorting errors.

Authors:  Antonio Pazienti; Sonja Grün
Journal:  J Comput Neurosci       Date:  2006-08-14       Impact factor: 1.621

Review 4.  Recent progress in multi-electrode spike sorting methods.

Authors:  Baptiste Lefebvre; Pierre Yger; Olivier Marre
Journal:  J Physiol Paris       Date:  2017-03-02

5.  Automated spike sorting using density grid contour clustering and subtractive waveform decomposition.

Authors:  Carlos Vargas-Irwin; John P Donoghue
Journal:  J Neurosci Methods       Date:  2007-04-12       Impact factor: 2.390

6.  A spatiotemporal coding mechanism for background-invariant odor recognition.

Authors:  Debajit Saha; Kevin Leong; Chao Li; Steven Peterson; Gregory Siegel; Baranidharan Raman
Journal:  Nat Neurosci       Date:  2013-11-03       Impact factor: 24.884

Review 7.  Improving data quality in neuronal population recordings.

Authors:  Kenneth D Harris; Rodrigo Quian Quiroga; Jeremy Freeman; Spencer L Smith
Journal:  Nat Neurosci       Date:  2016-08-26       Impact factor: 24.884

8.  Encoding of mixtures in a simple olfactory system.

Authors:  Kai Shen; Sina Tootoonian; Gilles Laurent
Journal:  Neuron       Date:  2013-11-07       Impact factor: 17.173

9.  Frequency transitions in odor-evoked neural oscillations.

Authors:  Iori Ito; Maxim Bazhenov; Rose Chik-ying Ong; Baranidharan Raman; Mark Stopfer
Journal:  Neuron       Date:  2009-12-10       Impact factor: 17.173

10.  Spike sorting of synchronous spikes from local neuron ensembles.

Authors:  Felix Franke; Robert Pröpper; Henrik Alle; Philipp Meier; Jörg R P Geiger; Klaus Obermayer; Matthias H J Munk
Journal:  J Neurophysiol       Date:  2015-08-19       Impact factor: 2.714

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