Literature DB >> 11125116

The Homeodomain Resource: sequences, structures, DNA binding sites and genomic information.

S Banerjee-Basu1, D W Sink, A D Baxevanis.   

Abstract

The Homeodomain Resource is an annotated collection of non-redundant protein sequences, three-dimensional structures and genomic information for the homeodomain protein family. Release 3.0 contains 795 full-length homeodomain-containing sequences, 32 experimentally-derived structures and 143 homeo-box loci implicated in human genetic disorders. Entries are fully hyperlinked to facilitate easy retrieval of the original records from source databases. A simple search engine with a graphical user interface is provided to query the component databases and assemble customized data sets. A new feature for this release is the addition of DNA recognition sites for all human homeodomain proteins described in the literature. The Homeodomain Resource is freely available through the World Wide Web at http://genome.nhgri.nih.gov/homeodomain.

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Year:  2001        PMID: 11125116      PMCID: PMC29851          DOI: 10.1093/nar/29.1.291

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  12 in total

1.  The homeodomain resource: a prototype database for a large protein family.

Authors:  S Banerjee-Basu; J F Ryan; A D Baxevanis
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Crystallization and preliminary X-ray diffraction studies of the engrailed homeodomain and of an engrailed homeodomain/DNA complex.

Authors:  B Liu; C R Kissinger; C O Pabo
Journal:  Biochem Biophys Res Commun       Date:  1990-08-31       Impact factor: 3.575

3.  Crystal structure of an engrailed homeodomain-DNA complex at 2.8 A resolution: a framework for understanding homeodomain-DNA interactions.

Authors:  C R Kissinger; B S Liu; E Martin-Blanco; T B Kornberg; C O Pabo
Journal:  Cell       Date:  1990-11-02       Impact factor: 41.582

4.  Interactions of the vnd/NK-2 homeodomain with DNA by nuclear magnetic resonance spectroscopy: basis of binding specificity.

Authors:  J M Gruschus; D H Tsao; L H Wang; M Nirenberg; J A Ferretti
Journal:  Biochemistry       Date:  1997-05-06       Impact factor: 3.162

5.  The structure of the Antennapedia homeodomain determined by NMR spectroscopy in solution: comparison with prokaryotic repressors.

Authors:  Y Q Qian; M Billeter; G Otting; M Müller; W J Gehring; K Wüthrich
Journal:  Cell       Date:  1989-11-03       Impact factor: 41.582

6.  Crystal structure of a MAT alpha 2 homeodomain-operator complex suggests a general model for homeodomain-DNA interactions.

Authors:  C Wolberger; A K Vershon; B Liu; A D Johnson; C O Pabo
Journal:  Cell       Date:  1991-11-01       Impact factor: 41.582

7.  Structural study of rat thyroid transcription factor 1 homeodomain (TTF-1 HD) by nuclear magnetic resonance.

Authors:  P Viglino; F Fogolari; S Formisano; N Bortolotti; G Damante; R Di Lauro; G Esposito
Journal:  FEBS Lett       Date:  1993-12-28       Impact factor: 4.124

8.  The X-ray structure of an atypical homeodomain present in the rat liver transcription factor LFB1/HNF1 and implications for DNA binding.

Authors:  T A Ceska; M Lamers; P Monaci; A Nicosia; R Cortese; D Suck
Journal:  EMBO J       Date:  1993-05       Impact factor: 11.598

9.  Solution structure of the POU-specific DNA-binding domain of Oct-1.

Authors:  N Dekker; M Cox; R Boelens; C P Verrijzer; P C van der Vliet; R Kaptein
Journal:  Nature       Date:  1993-04-29       Impact factor: 49.962

10.  Nuclear magnetic resonance solution structure of the fushi tarazu homeodomain from Drosophila and comparison with the Antennapedia homeodomain.

Authors:  Y Q Qian; K Furukubo-Tokunaga; D Resendez-Perez; M Müller; W J Gehring; K Wüthrich
Journal:  J Mol Biol       Date:  1994-05-06       Impact factor: 5.469

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  7 in total

1.  The Homeodomain Resource: 2003 update.

Authors:  Sharmila Banerjee-Basu; Travis Moreland; Benjamin J Hsu; Kenneth L Trout; Andreas D Baxevanis
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

2.  A phage display selection of engrailed homeodomain mutants and the importance of residue Q50.

Authors:  Matthew D Simon; Ken Sato; Gregory A Weiss; Kevan M Shokat
Journal:  Nucleic Acids Res       Date:  2004-07-09       Impact factor: 16.971

3.  Role of conserved salt bridges in homeodomain stability and DNA binding.

Authors:  Mario Torrado; Julia Revuelta; Carlos Gonzalez; Francisco Corzana; Agatha Bastida; Juan Luis Asensio
Journal:  J Biol Chem       Date:  2009-06-26       Impact factor: 5.157

4.  Missense mutations in the homeodomain of HOXD13 are associated with brachydactyly types D and E.

Authors:  David Johnson; Shih-Hsin Kan; Michael Oldridge; Richard C Trembath; Philippe Roche; Robert M Esnouf; Henk Giele; Andrew O M Wilkie
Journal:  Am J Hum Genet       Date:  2003-03-14       Impact factor: 11.025

5.  The Homeodomain Resource: a comprehensive collection of sequence, structure, interaction, genomic and functional information on the homeodomain protein family.

Authors:  R Travis Moreland; Joseph F Ryan; Christopher Pan; Andreas D Baxevanis
Journal:  Database (Oxford)       Date:  2009-04-17       Impact factor: 3.451

6.  New Insights into Cooperative Binding of Homeodomain Transcription Factors PREP1 and PBX1 to DNA.

Authors:  Chiara Zucchelli; Elena Ferrari; Francesco Blasi; Giovanna Musco; Chiara Bruckmann
Journal:  Sci Rep       Date:  2017-01-17       Impact factor: 4.379

7.  Rhombomere-specific analysis reveals the repertoire of genetic cues expressed across the developing hindbrain.

Authors:  David Chambers; Leigh Jane Wilson; Fabienne Alfonsi; Ewan Hunter; Uma Saxena; Eric Blanc; Andrew Lumsden
Journal:  Neural Dev       Date:  2009-02-10       Impact factor: 3.842

  7 in total

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