Literature DB >> 12513519

Binless strategies for estimation of information from neural data.

Jonathan D Victor1.   

Abstract

We present an approach to estimate information carried by experimentally observed neural spike trains elicited by known stimuli. This approach makes use of an embedding of the observed spike trains into a set of vector spaces, and entropy estimates based on the nearest-neighbor Euclidean distances within these vector spaces [L. F. Kozachenko and N. N. Leonenko, Probl. Peredachi Inf. 23, 9 (1987)]. Using numerical examples, we show that this approach can be dramatically more efficient than standard bin-based approaches such as the "direct" method [S. P. Strong, R. Koberle, R. R. de Ruyter van Steveninck, and W. Bialek, Phys. Rev. Lett. 80, 197 (1998)] for amounts of data typically available from laboratory experiments.

Mesh:

Year:  2002        PMID: 12513519     DOI: 10.1103/PhysRevE.66.051903

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  52 in total

1.  Synergy, redundancy, and independence in population codes.

Authors:  Elad Schneidman; William Bialek; Michael J Berry
Journal:  J Neurosci       Date:  2003-12-17       Impact factor: 6.167

2.  Non-Euclidean properties of spike train metric spaces.

Authors:  Dmitriy Aronov; Jonathan D Victor
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2004-06-02

3.  On directed information theory and Granger causality graphs.

Authors:  Pierre-Olivier Amblard; Olivier J J Michel
Journal:  J Comput Neurosci       Date:  2010-03-24       Impact factor: 1.621

4.  A metric space approach to the information channel capacity of spike trains.

Authors:  James B Gillespie; Conor J Houghton
Journal:  J Comput Neurosci       Date:  2010-10-23       Impact factor: 1.621

5.  Encoding stimulus information by spike numbers and mean response time in primary auditory cortex.

Authors:  Israel Nelken; Gal Chechik; Thomas D Mrsic-Flogel; Andrew J King; Jan W H Schnupp
Journal:  J Comput Neurosci       Date:  2005-10       Impact factor: 1.621

Review 6.  Spike train metrics.

Authors:  Jonathan D Victor
Journal:  Curr Opin Neurobiol       Date:  2005-10       Impact factor: 6.627

7.  First-spike latency information in single neurons increases when referenced to population onset.

Authors:  Steven M Chase; Eric D Young
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-09       Impact factor: 11.205

8.  Spike coding from the perspective of a neurone.

Authors:  G S Bhumbra; R E J Dyball
Journal:  Cogn Process       Date:  2005-08-12

9.  Spike train analysis toolkit: enabling wider application of information-theoretic techniques to neurophysiology.

Authors:  David H Goldberg; Jonathan D Victor; Esther P Gardner; Daniel Gardner
Journal:  Neuroinformatics       Date:  2009-05-28

Review 10.  A Tutorial for Information Theory in Neuroscience.

Authors:  Nicholas M Timme; Christopher Lapish
Journal:  eNeuro       Date:  2018-09-11
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