Literature DB >> 20333542

On directed information theory and Granger causality graphs.

Pierre-Olivier Amblard1, Olivier J J Michel.   

Abstract

Directed information theory deals with communication channels with feedback. When applied to networks, a natural extension based on causal conditioning is needed. We show here that measures built from directed information theory in networks can be used to assess Granger causality graphs of stochastic processes. We show that directed information theory includes measures such as the transfer entropy, and that it is the adequate information theoretic framework needed for neuroscience applications, such as connectivity inference problems.

Mesh:

Year:  2010        PMID: 20333542     DOI: 10.1007/s10827-010-0231-x

Source DB:  PubMed          Journal:  J Comput Neurosci        ISSN: 0929-5313            Impact factor:   1.621


  14 in total

1.  Synchronization as adjustment of information rates: detection from bivariate time series.

Authors:  M Palus; V Komárek; Z Hrncír; K Sterbová
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2001-03-28

2.  Estimating mutual information.

Authors:  Alexander Kraskov; Harald Stögbauer; Peter Grassberger
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2004-06-23

3.  Granger causality and transfer entropy are equivalent for Gaussian variables.

Authors:  Lionel Barnett; Adam B Barrett; Anil K Seth
Journal:  Phys Rev Lett       Date:  2009-12-04       Impact factor: 9.161

4.  Causal connectivity of evolved neural networks during behavior.

Authors:  Anil K Seth
Journal:  Network       Date:  2005-03       Impact factor: 1.273

5.  A graphical approach for evaluating effective connectivity in neural systems.

Authors:  Michael Eichler
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2005-05-29       Impact factor: 6.237

6.  On the evaluation of information flow in multivariate systems by the directed transfer function.

Authors:  Michael Eichler
Journal:  Biol Cybern       Date:  2006-03-17       Impact factor: 2.086

7.  Distinguishing causal interactions in neural populations.

Authors:  Anil K Seth; Gerald M Edelman
Journal:  Neural Comput       Date:  2007-04       Impact factor: 2.026

8.  Partial mutual information for coupling analysis of multivariate time series.

Authors:  Stefan Frenzel; Bernd Pompe
Journal:  Phys Rev Lett       Date:  2007-11-14       Impact factor: 9.161

9.  Identification of synaptic connections in neural ensembles by graphical models.

Authors:  R Dahlhaus; M Eichler; J Sandkühler
Journal:  J Neurosci Methods       Date:  1997-11-07       Impact factor: 2.390

10.  A resilient, low-frequency, small-world human brain functional network with highly connected association cortical hubs.

Authors:  Sophie Achard; Raymond Salvador; Brandon Whitcher; John Suckling; Ed Bullmore
Journal:  J Neurosci       Date:  2006-01-04       Impact factor: 6.167

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  17 in total

1.  Information theory in neuroscience.

Authors:  Alexander G Dimitrov; Aurel A Lazar; Jonathan D Victor
Journal:  J Comput Neurosci       Date:  2011-02       Impact factor: 1.621

2.  Delayed mutual information infers patterns of synaptic connectivity in a proprioceptive neural network.

Authors:  Wagner Endo; Fernando P Santos; David Simpson; Carlos D Maciel; Philip L Newland
Journal:  J Comput Neurosci       Date:  2015-02-03       Impact factor: 1.621

Review 3.  Graph analysis of functional brain networks: practical issues in translational neuroscience.

Authors:  Fabrizio De Vico Fallani; Jonas Richiardi; Mario Chavez; Sophie Achard
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2014-10-05       Impact factor: 6.237

4.  Estimating the directed information to infer causal relationships in ensemble neural spike train recordings.

Authors:  Christopher J Quinn; Todd P Coleman; Negar Kiyavash; Nicholas G Hatsopoulos
Journal:  J Comput Neurosci       Date:  2010-06-26       Impact factor: 1.621

5.  Quantification of effective connectivity in the brain using a measure of directed information.

Authors:  Ying Liu; Selin Aviyente
Journal:  Comput Math Methods Med       Date:  2012-05-16       Impact factor: 2.238

6.  TRENTOOL: a Matlab open source toolbox to analyse information flow in time series data with transfer entropy.

Authors:  Michael Lindner; Raul Vicente; Viola Priesemann; Michael Wibral
Journal:  BMC Neurosci       Date:  2011-11-18       Impact factor: 3.288

7.  When two become one: the limits of causality analysis of brain dynamics.

Authors:  Daniel Chicharro; Anders Ledberg
Journal:  PLoS One       Date:  2012-03-16       Impact factor: 3.240

8.  Efficient transfer entropy analysis of non-stationary neural time series.

Authors:  Patricia Wollstadt; Mario Martínez-Zarzuela; Raul Vicente; Francisco J Díaz-Pernas; Michael Wibral
Journal:  PLoS One       Date:  2014-07-28       Impact factor: 3.240

9.  Multiplex networks of cortical and hippocampal neurons revealed at different timescales.

Authors:  Nicholas Timme; Shinya Ito; Maxym Myroshnychenko; Fang-Chin Yeh; Emma Hiolski; Pawel Hottowy; John M Beggs
Journal:  PLoS One       Date:  2014-12-23       Impact factor: 3.240

10.  Measuring information-transfer delays.

Authors:  Michael Wibral; Nicolae Pampu; Viola Priesemann; Felix Siebenhühner; Hannes Seiwert; Michael Lindner; Joseph T Lizier; Raul Vicente
Journal:  PLoS One       Date:  2013-02-28       Impact factor: 3.240

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