Literature DB >> 15339807

Mesoscopic lateral diffusion in lipid bilayers.

Gary S Ayton1, Gregory A Voth.   

Abstract

The lateral diffusion in bilayers is modeled with a multiscale mesoscopic simulation. The methodology consists of two simulations, where the first employs atomistic models to obtain exact results for the mesoscopic model. The second simulation takes the results obtained from the first to parameterize an effective force field that is employed in a new coarse-grained model. The multiscale aspect of this scheme occurs at the point where the microscopic time-averaged results of the first simulation are employed to parameterize the second simulation that operates in a higher spatial and temporal domain. The results of both simulation schemes give quantitative information on the details associated with lipid lateral diffusion.

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Year:  2004        PMID: 15339807      PMCID: PMC1304798          DOI: 10.1529/biophysj.104.047811

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  29 in total

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Authors:  Gary Ayton; Alexander M Smondyrev; Scott G Bardenhagen; Patrick McMurtry; Gregory A Voth
Journal:  Biophys J       Date:  2002-03       Impact factor: 4.033

2.  Dynamics of pinned membranes with application to protein diffusion on the surface of red blood cells.

Authors:  Lawrence C-L Lin; Frank L H Brown
Journal:  Biophys J       Date:  2004-02       Impact factor: 4.033

3.  Bridging microscopic and mesoscopic simulations of lipid bilayers.

Authors:  Gary Ayton; Gregory A Voth
Journal:  Biophys J       Date:  2002-12       Impact factor: 4.033

4.  Microscopic versus macroscopic diffusion in model membranes by electron spin resonance spectral-spatial imaging.

Authors:  Y K Shin; U Ewert; D E Budil; J H Freed
Journal:  Biophys J       Date:  1991-04       Impact factor: 4.033

5.  Microscopic versus macroscopic diffusion in one-component fluid phase lipid bilayer membranes.

Authors:  W L Vaz; P F Almeida
Journal:  Biophys J       Date:  1991-12       Impact factor: 4.033

6.  Viscous conducting flows with smooth-particle applied mechanics.

Authors: 
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  1995-11

7.  Lateral diffusion of cholesterol and dimyristoylphosphatidylcholine in a lipid bilayer measured by pulsed field gradient NMR spectroscopy.

Authors:  Greger Orädd; Göran Lindblom; Philip W Westerman
Journal:  Biophys J       Date:  2002-11       Impact factor: 4.033

8.  Mechanical properties of vesicles. II. A model for osmotic swelling and lysis.

Authors:  F R Hallett; J Marsh; B G Nickel; J M Wood
Journal:  Biophys J       Date:  1993-02       Impact factor: 4.033

9.  Molecular dynamics simulations of phospholipid bilayers with cholesterol.

Authors:  Christofer Hofsäss; Erik Lindahl; Olle Edholm
Journal:  Biophys J       Date:  2003-04       Impact factor: 4.033

10.  The effect of cholesterol on the lateral diffusion of phospholipids in oriented bilayers.

Authors:  Andrey Filippov; Greger Orädd; Göran Lindblom
Journal:  Biophys J       Date:  2003-05       Impact factor: 4.033

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  12 in total

Review 1.  Biomolecular simulation and modelling: status, progress and prospects.

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4.  Four-scale description of membrane sculpting by BAR domains.

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5.  Multiscale Simulations of Biological Membranes: The Challenge To Understand Biological Phenomena in a Living Substance.

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Review 6.  Bottom-up Coarse-Graining: Principles and Perspectives.

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Journal:  J Chem Theory Comput       Date:  2022-09-07       Impact factor: 6.578

7.  Lateral mobility of proteins in liquid membranes revisited.

Authors:  Y Gambin; R Lopez-Esparza; M Reffay; E Sierecki; N S Gov; M Genest; R S Hodges; W Urbach
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-06       Impact factor: 11.205

8.  Enhanced Lipid Diffusion and Mixing in Accelerated Molecular Dynamics.

Authors:  Yi Wang; Phineus R L Markwick; César Augusto F de Oliveira; J Andrew McCammon
Journal:  J Chem Theory Comput       Date:  2011-08-24       Impact factor: 6.006

9.  Methodologies for the analysis of instantaneous lipid diffusion in MD simulations of large membrane systems.

Authors:  Matthieu Chavent; Tyler Reddy; Joseph Goose; Anna Caroline E Dahl; John E Stone; Bruno Jobard; Mark S P Sansom
Journal:  Faraday Discuss       Date:  2014-06-17       Impact factor: 4.394

10.  Fractal analysis of lateral movement in biomembranes.

Authors:  Lech Gmachowski
Journal:  Eur Biophys J       Date:  2017-11-02       Impact factor: 1.733

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