Literature DB >> 11603987

An experimental and theoretical investigation of the chemical shielding tensors of (13)C(alpha) of alanine, valine, and leucine residues in solid peptides and in proteins in solution.

R H Havlin1, D D Laws, H M Bitter, L K Sanders, H Sun, J S Grimley, D E Wemmer, A Pines, E Oldfield.   

Abstract

We have carried out a solid-state magic-angle sample-spinning (MAS) nuclear magnetic resonance (NMR) spectroscopic investigation of the (13)C(alpha) chemical shielding tensors of alanine, valine, and leucine residues in a series of crystalline peptides of known structure. For alanine and leucine, which are not branched at the beta-carbon, the experimental chemical shift anisotropy (CSA) spans (Omega) are large, about 30 ppm, independent of whether the residues adopt helical or sheet geometries, and are in generally good accord with Omega values calculated by using ab initio Hartree-Fock quantum chemical methods. The experimental Omegas for valine C(alpha) in two peptides (in sheet geometries) are also large and in good agreement with theoretical predictions. In contrast, the "CSAs" (Deltasigma) obtained from solution NMR data for alanine, valine, and leucine residues in proteins show major differences, with helical residues having Deltasigma values of approximately 6 ppm while sheet residues have Deltasigma approximately 27 ppm. The origins of these differences are shown to be due to the different definitions of the CSA. When defined in terms of the solution NMR CSA, the solid-state results also show small helical but large sheet CSA values. These results are of interest since they lead to the idea that only the beta-branched amino acids threonine, valine, and isoleucine can have small (static) tensor spans, Omega (in helical geometries), and that the small helical "CSAs" seen in solution NMR are overwhelmingly dominated by changes in tensor orientation, from sheet to helix. These results have important implications for solid-state NMR structural studies which utilize the CSA span, Omega, to differentiate between helical and sheet residues. Specifically, there will be only a small degree of spectral editing possible in solid proteins since the spans, Omega, for the dominant nonbranched amino acids are quite similar. Editing on the basis of Omega will, however, be very effective for many Thr, Val, and Ileu residues, which frequently have small ( approximately 15-20 ppm) helical CSA (Omega) spans.

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Year:  2001        PMID: 11603987     DOI: 10.1021/ja0115060

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  12 in total

1.  C(alpha) chemical shift tensors in helical peptides by dipolar-modulated chemical shift recoupling NMR.

Authors:  Xiaolan Yao; Satoru Yamaguchi; Mei Hong
Journal:  J Biomol NMR       Date:  2002-09       Impact factor: 2.835

2.  Predicting 15N chemical shifts in proteins using the preceding residue-specific individual shielding surfaces from phi, psi i-1, and chi 1 torsion angles.

Authors:  Yunjun Wang; Oleg Jardetzky
Journal:  J Biomol NMR       Date:  2004-04       Impact factor: 2.835

Review 3.  Chemical shift tensor - the heart of NMR: Insights into biological aspects of proteins.

Authors:  Hazime Saitô; Isao Ando; Ayyalusamy Ramamoorthy
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-05-07       Impact factor: 9.795

Review 4.  Quantum chemical studies of protein structure.

Authors:  Eric Oldfield
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2005-06-29       Impact factor: 6.237

5.  Determination of 15N chemical shift anisotropy from a membrane-bound protein by NMR spectroscopy.

Authors:  Manoj Kumar Pandey; Subramanian Vivekanandan; Shivani Ahuja; Kumar Pichumani; Sang-Choul Im; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  J Phys Chem B       Date:  2012-06-04       Impact factor: 2.991

6.  Calculation of chemical shift anisotropy in proteins.

Authors:  Sishi Tang; David A Case
Journal:  J Biomol NMR       Date:  2011-08-26       Impact factor: 2.835

7.  Determination of the orientation and dynamics of ergosterol in model membranes using uniform 13C labeling and dynamically averaged 13C chemical shift anisotropies as experimental restraints.

Authors:  O Soubias; F Jolibois; S Massou; A Milon; V Réat
Journal:  Biophys J       Date:  2005-05-27       Impact factor: 4.033

8.  Ab initio study of (13)C(alpha) chemical shift anisotropy tensors in peptides.

Authors:  Jeff Birn; Alan Poon; Y Mao; A Ramamoorthy
Journal:  J Am Chem Soc       Date:  2004-07-14       Impact factor: 15.419

9.  Probing slow backbone dynamics in proteins using TROSY-based experiments to detect cross-correlated time-modulation of isotropic chemical shifts.

Authors:  Ananya Majumdar; Ranajeet Ghose
Journal:  J Biomol NMR       Date:  2004-03       Impact factor: 2.835

10.  Protein structure refinement using 13C alpha chemical shift tensors.

Authors:  Benjamin J Wylie; Charles D Schwieters; Eric Oldfield; Chad M Rienstra
Journal:  J Am Chem Soc       Date:  2009-01-28       Impact factor: 15.419

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