Literature DB >> 12428899

Towards an understanding of complex biological membranes from atomistic molecular dynamics simulations.

Leonor Saiz1, Sanjoy Bandyopadhyay, Michael L Klein.   

Abstract

Computer simulation has emerged as a powerful tool for studying the structural and functional properties of complex biological membranes. In the last few years, the use of recently developed simulation methodologies and current generation force fields has permitted novel applications of molecular dynamics simulations, which have enhanced our understanding of the different physical processes governing biomembrane structure and dynamics. This review focuses on frontier areas of research with important biomedical applications. We have paid special attention to polyunsaturated lipids, membrane proteins and ion channels, surfactant additives in membranes, and lipid-DNA gene transfer complexes.

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Year:  2002        PMID: 12428899     DOI: 10.1023/a:1020130420869

Source DB:  PubMed          Journal:  Biosci Rep        ISSN: 0144-8463            Impact factor:   3.840


  27 in total

1.  Membrane perturbation induced by interfacially adsorbed peptides.

Authors:  Assaf Zemel; Avinoam Ben-Shaul; Sylvio May
Journal:  Biophys J       Date:  2004-06       Impact factor: 4.033

2.  Two-component coarse-grained molecular-dynamics model for the human erythrocyte membrane.

Authors:  He Li; George Lykotrafitis
Journal:  Biophys J       Date:  2012-01-03       Impact factor: 4.033

3.  2H-NMR study and molecular dynamics simulation of the location, alignment, and mobility of pyrene in POPC bilayers.

Authors:  Barbara Hoff; Erik Strandberg; Anne S Ulrich; D Peter Tieleman; Clemens Posten
Journal:  Biophys J       Date:  2004-12-13       Impact factor: 4.033

4.  Interaction of the antimicrobial peptide cyclo(RRWWRF) with membranes by molecular dynamics simulations.

Authors:  Christian Appelt; Frank Eisenmenger; Ronald Kühne; Peter Schmieder; J Arvid Söderhäll
Journal:  Biophys J       Date:  2005-07-22       Impact factor: 4.033

5.  Ion conduction through MscS as determined by electrophysiology and simulation.

Authors:  Marcos Sotomayor; Valeria Vásquez; Eduardo Perozo; Klaus Schulten
Journal:  Biophys J       Date:  2006-11-17       Impact factor: 4.033

6.  'KMC-TDGL'-a coarse-grained methodology for simulating interfacial dynamics in complex fluids: application to protein-mediated membrane processes.

Authors:  J Weinstein; R Radhakrishnan
Journal:  Mol Phys       Date:  2006       Impact factor: 1.962

7.  OpenRBC: A Fast Simulator of Red Blood Cells at Protein Resolution.

Authors:  Yu-Hang Tang; Lu Lu; He Li; Constantinos Evangelinos; Leopold Grinberg; Vipin Sachdeva; George Em Karniadakis
Journal:  Biophys J       Date:  2017-05-23       Impact factor: 4.033

8.  Erythrocyte membrane model with explicit description of the lipid bilayer and the spectrin network.

Authors:  He Li; George Lykotrafitis
Journal:  Biophys J       Date:  2014-08-05       Impact factor: 4.033

9.  Study of procaine and tetracaine in the lipid bilayer using molecular dynamics simulation.

Authors:  Seifollah Jalili; Marzieh Saeedi
Journal:  Eur Biophys J       Date:  2016-08-24       Impact factor: 1.733

10.  A systematically coarse-grained solvent-free model for quantitative phospholipid bilayer simulations.

Authors:  Zun-Jing Wang; Markus Deserno
Journal:  J Phys Chem B       Date:  2010-09-02       Impact factor: 2.991

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