Literature DB >> 12403462

A general role for splicing enhancers in exon definition.

Bianca J Lam1, Klemens J Hertel.   

Abstract

Exonic splicing enhancers (ESEs) facilitate exon definition by assisting in the recruitment of splicing factors to the adjacent intron. Here we demonstrate that suboptimal 5' and 3' splice sites are activated independently by ESEs when they are located on different exons. However, when they are situated within a single exon, the same weak 5' and 3' splice sites are activated simultaneously by a single ESE. These findings demonstrate that a single ESE promotes the recognition of both exon/intron junctions within the same step during exon definition. Our results suggest that ESEs recruit a multicomponent complex that minimally contains components of the splicing machinery required for 5' and 3' splice site selection.

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Year:  2002        PMID: 12403462      PMCID: PMC1370333          DOI: 10.1017/s1355838202028030

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  33 in total

1.  Identification of a bidirectional splicing enhancer: differential involvement of SR proteins in 5' or 3' splice site activation.

Authors:  C F Bourgeois; M Popielarz; G Hildwein; J Stevenin
Journal:  Mol Cell Biol       Date:  1999-11       Impact factor: 4.272

Review 2.  Determinants of SR protein specificity.

Authors:  R Tacke; J L Manley
Journal:  Curr Opin Cell Biol       Date:  1999-06       Impact factor: 8.382

Review 3.  Exonic splicing enhancers: mechanism of action, diversity and role in human genetic diseases.

Authors:  B J Blencowe
Journal:  Trends Biochem Sci       Date:  2000-03       Impact factor: 13.807

Review 4.  Alternative splicing: increasing diversity in the proteomic world.

Authors:  B R Graveley
Journal:  Trends Genet       Date:  2001-02       Impact factor: 11.639

Review 5.  Protein diversity from alternative splicing: a challenge for bioinformatics and post-genome biology.

Authors:  D L Black
Journal:  Cell       Date:  2000-10-27       Impact factor: 41.582

Review 6.  Sorting out the complexity of SR protein functions.

Authors:  B R Graveley
Journal:  RNA       Date:  2000-09       Impact factor: 4.942

7.  Exonic splicing enhancers contribute to the use of both 3' and 5' splice site usage of rat beta-tropomyosin pre-mRNA.

Authors:  M Selvakumar; D M Helfman
Journal:  RNA       Date:  1999-03       Impact factor: 4.942

8.  BRCA1 sequence variations in 160 individuals referred to a breast/ovarian family cancer clinic. Institut Curie Breast Cancer Group.

Authors:  D Stoppa-Lyonnet; P Laurent-Puig; L Essioux; S Pagès; G Ithier; L Ligot; A Fourquet; R J Salmon; K B Clough; P Pouillart; C Bonaïti-Pellié; G Thomas
Journal:  Am J Hum Genet       Date:  1997-05       Impact factor: 11.025

9.  The role of U2AF35 and U2AF65 in enhancer-dependent splicing.

Authors:  B R Graveley; K J Hertel; T Maniatis
Journal:  RNA       Date:  2001-06       Impact factor: 4.942

10.  Multiple distinct splicing enhancers in the protein-coding sequences of a constitutively spliced pre-mRNA.

Authors:  T D Schaal; T Maniatis
Journal:  Mol Cell Biol       Date:  1999-01       Impact factor: 4.272

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  35 in total

1.  Retention of spliceosomal components along ligated exons ensures efficient removal of multiple introns.

Authors:  Tara L Crabb; Bianca J Lam; Klemens J Hertel
Journal:  RNA       Date:  2010-07-07       Impact factor: 4.942

2.  The architecture of pre-mRNAs affects mechanisms of splice-site pairing.

Authors:  Kristi L Fox-Walsh; Yimeng Dou; Bianca J Lam; She-Pin Hung; Pierre F Baldi; Klemens J Hertel
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-31       Impact factor: 11.205

Review 3.  Splicing in action: assessing disease causing sequence changes.

Authors:  D Baralle; M Baralle
Journal:  J Med Genet       Date:  2005-10       Impact factor: 6.318

4.  Role of purine-rich exonic splicing enhancers in nuclear retention of pre-mRNAs.

Authors:  Ichiro Taniguchi; Kaoru Masuyama; Mutsuhito Ohno
Journal:  Proc Natl Acad Sci U S A       Date:  2007-08-15       Impact factor: 11.205

5.  RICH2 is implicated in viraemic control of HIV-1 in black South African individuals.

Authors:  Maria Paximadis; Refilwe N Ngqobe; Richard E Chaisson; Neil A Martinson; Caroline T Tiemessen
Journal:  Infect Genet Evol       Date:  2017-01-06       Impact factor: 3.342

6.  A prospective study in the rational design of efficient antisense oligonucleotides for exon skipping in the DMD gene.

Authors:  Zacharias Aloysius Dwi Pramono; Keng Boon Wee; Jian Li Wang; Yi Jun Chen; Qian Bin Xiong; Poh San Lai; Woon Chee Yee
Journal:  Hum Gene Ther       Date:  2012-07-13       Impact factor: 5.695

7.  A duplication in the canine beta-galactosidase gene GLB1 causes exon skipping and GM1-gangliosidosis in Alaskan huskies.

Authors:  Robert Kreutzer; Tosso Leeb; Gundi Müller; Andreas Moritz; Wolfgang Baumgärtner
Journal:  Genetics       Date:  2005-06-08       Impact factor: 4.562

8.  Enhancer-dependent 5'-splice site control of fruitless pre-mRNA splicing.

Authors:  Bianca J Lam; Arati Bakshi; Fatma Y Ekinci; Jenny Webb; Brenton R Graveley; Klemens J Hertel
Journal:  J Biol Chem       Date:  2003-03-19       Impact factor: 5.157

9.  Kinetic analysis of in vitro pre-mRNA splicing in HeLa nuclear extract.

Authors:  William F Mueller; Klemens J Hertel
Journal:  Methods Mol Biol       Date:  2014

Review 10.  The SR protein family.

Authors:  Peter J Shepard; Klemens J Hertel
Journal:  Genome Biol       Date:  2009-10-27       Impact factor: 13.583

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