Literature DB >> 12396564

Information-geometric measure for neural spikes.

Hiroyuki Nakahara1, Shun-ichi Amari.   

Abstract

This study introduces information-geometric measures to analyze neural firing patterns by taking not only the second-order but also higher-order interactions among neurons into account. Information geometry provides useful tools and concepts for this purpose, including the orthogonality of coordinate parameters and the Pythagoras relation in the Kullback-Leibler divergence. Based on this orthogonality, we show a novel method for analyzing spike firing patterns by decomposing the interactions of neurons of various orders. As a result, purely pairwise, triple-wise, and higher-order interactions are singled out. We also demonstrate the benefits of our proposal by using several examples.

Mesh:

Year:  2002        PMID: 12396564     DOI: 10.1162/08997660260293238

Source DB:  PubMed          Journal:  Neural Comput        ISSN: 0899-7667            Impact factor:   2.026


  29 in total

1.  Higher-order interactions characterized in cortical activity.

Authors:  Shan Yu; Hongdian Yang; Hiroyuki Nakahara; Gustavo S Santos; Danko Nikolić; Dietmar Plenz
Journal:  J Neurosci       Date:  2011-11-30       Impact factor: 6.167

2.  Generation of synthetic spike trains with defined pairwise correlations.

Authors:  Ernst Niebur
Journal:  Neural Comput       Date:  2007-07       Impact factor: 2.026

Review 3.  Analyzing the activity of large populations of neurons: how tractable is the problem?

Authors:  Sheila H Nirenberg; Jonathan D Victor
Journal:  Curr Opin Neurobiol       Date:  2007-08-20       Impact factor: 6.627

Review 4.  Data-driven significance estimation for precise spike correlation.

Authors:  Sonja Grün
Journal:  J Neurophysiol       Date:  2009-01-07       Impact factor: 2.714

5.  Interpreting neurodynamics: concepts and facts.

Authors:  Harald Atmanspacher; Stefan Rotter
Journal:  Cogn Neurodyn       Date:  2008-10-15       Impact factor: 5.082

6.  Approaches to Information-Theoretic Analysis of Neural Activity.

Authors:  Jonathan D Victor
Journal:  Biol Theory       Date:  2006

7.  Detecting pairwise correlations in spike trains: an objective comparison of methods and application to the study of retinal waves.

Authors:  Catherine S Cutts; Stephen J Eglen
Journal:  J Neurosci       Date:  2014-10-22       Impact factor: 6.167

8.  Hierarchical interaction structure of neural activities in cortical slice cultures.

Authors:  Gustavo S Santos; Elakkat D Gireesh; Dietmar Plenz; Hiroyuki Nakahara
Journal:  J Neurosci       Date:  2010-06-30       Impact factor: 6.167

9.  Multivariate autoregressive modeling and granger causality analysis of multiple spike trains.

Authors:  Michael Krumin; Shy Shoham
Journal:  Comput Intell Neurosci       Date:  2010-04-29

10.  A toolbox for the fast information analysis of multiple-site LFP, EEG and spike train recordings.

Authors:  Cesare Magri; Kevin Whittingstall; Vanessa Singh; Nikos K Logothetis; Stefano Panzeri
Journal:  BMC Neurosci       Date:  2009-07-16       Impact factor: 3.288

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