Literature DB >> 20592194

Hierarchical interaction structure of neural activities in cortical slice cultures.

Gustavo S Santos1, Elakkat D Gireesh, Dietmar Plenz, Hiroyuki Nakahara.   

Abstract

Recent advances in the analysis of neuronal activities suggest that the instantaneous activity patterns can be mostly explained by considering only first-order and pairwise interactions between recorded elements, i.e., action potentials or local field potentials (LFP), and do not require higher-than-pairwise-order interactions. If generally applicable, this pairwise approach greatly simplifies the description of network interactions. However, an important question remains: are the recorded elements the units of interaction that best describe neuronal activity patterns? To explore this, we recorded spontaneous LFP peak activities in cortical organotypic cultures using planar, integrated 60-microelectrode arrays. We compared predictions obtained using a pairwise approach with those using a hierarchical approach that uses two different spatial units for describing the activity interactions: single electrodes and electrode clusters. In this hierarchical model, short-range interactions within each cluster were modeled by pairwise interactions of electrode activities and long-range interactions were modeled by pairwise interactions of cluster activities. Despite the relatively low number of parameters used, the hierarchical model provided a more accurate description of the activity patterns than the pairwise model when applied to ensembles of 10 electrodes. Furthermore, the hierarchical model was successfully applied to a larger-scale data of approximately 60 electrodes. Electrode activities within clusters were highly correlated and spatially contiguous. In contrast, long-range interactions were diffuse, suggesting the presence of higher-than-pairwise-order interactions involved in the LFP peak activities. Thus, the identification of appropriate units of interaction may allow for the successful characterization of neuronal activities in large-scale networks.

Entities:  

Mesh:

Year:  2010        PMID: 20592194      PMCID: PMC3042275          DOI: 10.1523/JNEUROSCI.6141-09.2010

Source DB:  PubMed          Journal:  J Neurosci        ISSN: 0270-6474            Impact factor:   6.167


  49 in total

1.  Weak pairwise correlations imply strongly correlated network states in a neural population.

Authors:  Elad Schneidman; Michael J Berry; Ronen Segev; William Bialek
Journal:  Nature       Date:  2006-04-09       Impact factor: 49.962

2.  The structure of multi-neuron firing patterns in primate retina.

Authors:  Jonathon Shlens; Greg D Field; Jeffrey L Gauthier; Matthew I Grivich; Dumitru Petrusca; Alexander Sher; Alan M Litke; E J Chichilnisky
Journal:  J Neurosci       Date:  2006-08-09       Impact factor: 6.167

3.  Spontaneous cortical activity in awake monkeys composed of neuronal avalanches.

Authors:  Thomas Petermann; Tara C Thiagarajan; Mikhail A Lebedev; Miguel A L Nicolelis; Dante R Chialvo; Dietmar Plenz
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-26       Impact factor: 11.205

4.  Up and down states in striatal medium spiny neurons simultaneously recorded with spontaneous activity in fast-spiking interneurons studied in cortex-striatum-substantia nigra organotypic cultures.

Authors:  D Plenz; S T Kitai
Journal:  J Neurosci       Date:  1998-01-01       Impact factor: 6.167

5.  Spontaneous periodic synchronized bursting during formation of mature patterns of connections in cortical cultures.

Authors:  H Kamioka; E Maeda; Y Jimbo; H P Robinson; A Kawana
Journal:  Neurosci Lett       Date:  1996-03-15       Impact factor: 3.046

6.  Computing with neural circuits: a model.

Authors:  J J Hopfield; D W Tank
Journal:  Science       Date:  1986-08-08       Impact factor: 47.728

Review 7.  Visual feature integration and the temporal correlation hypothesis.

Authors:  W Singer; C M Gray
Journal:  Annu Rev Neurosci       Date:  1995       Impact factor: 12.449

8.  The mechanisms of generation and propagation of synchronized bursting in developing networks of cortical neurons.

Authors:  E Maeda; H P Robinson; A Kawana
Journal:  J Neurosci       Date:  1995-10       Impact factor: 6.167

9.  Neuronal avalanches organize as nested theta- and beta/gamma-oscillations during development of cortical layer 2/3.

Authors:  Elakkat D Gireesh; Dietmar Plenz
Journal:  Proc Natl Acad Sci U S A       Date:  2008-05-22       Impact factor: 11.205

10.  Python for information theoretic analysis of neural data.

Authors:  Robin A A Ince; Rasmus S Petersen; Daniel C Swan; Stefano Panzeri
Journal:  Front Neuroinform       Date:  2009-02-11       Impact factor: 4.081

View more
  9 in total

1.  Higher-order interactions characterized in cortical activity.

Authors:  Shan Yu; Hongdian Yang; Hiroyuki Nakahara; Gustavo S Santos; Danko Nikolić; Dietmar Plenz
Journal:  J Neurosci       Date:  2011-11-30       Impact factor: 6.167

2.  Sparse low-order interaction network underlies a highly correlated and learnable neural population code.

Authors:  Elad Ganmor; Ronen Segev; Elad Schneidman
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-20       Impact factor: 11.205

3.  State-space analysis of time-varying higher-order spike correlation for multiple neural spike train data.

Authors:  Hideaki Shimazaki; Shun-Ichi Amari; Emery N Brown; Sonja Grün
Journal:  PLoS Comput Biol       Date:  2012-03-08       Impact factor: 4.475

4.  Energy landscapes of resting-state brain networks.

Authors:  Takamitsu Watanabe; Satoshi Hirose; Hiroyuki Wada; Yoshio Imai; Toru Machida; Ichiro Shirouzu; Seiki Konishi; Yasushi Miyashita; Naoki Masuda
Journal:  Front Neuroinform       Date:  2014-02-25       Impact factor: 4.081

5.  When do microcircuits produce beyond-pairwise correlations?

Authors:  Andrea K Barreiro; Julijana Gjorgjieva; Fred Rieke; Eric Shea-Brown
Journal:  Front Comput Neurosci       Date:  2014-02-06       Impact factor: 2.380

6.  Network evolution induced by asynchronous stimuli through spike-timing-dependent plasticity.

Authors:  Wu-Jie Yuan; Jian-Fang Zhou; Changsong Zhou
Journal:  PLoS One       Date:  2013-12-31       Impact factor: 3.240

7.  Searching for collective behavior in a large network of sensory neurons.

Authors:  Gašper Tkačik; Olivier Marre; Dario Amodei; Elad Schneidman; William Bialek; Michael J Berry
Journal:  PLoS Comput Biol       Date:  2014-01-02       Impact factor: 4.475

8.  Machine Learning Classification Combining Multiple Features of A Hyper-Network of fMRI Data in Alzheimer's Disease.

Authors:  Hao Guo; Fan Zhang; Junjie Chen; Yong Xu; Jie Xiang
Journal:  Front Neurosci       Date:  2017-11-21       Impact factor: 4.677

9.  Simultaneous silence organizes structured higher-order interactions in neural populations.

Authors:  Hideaki Shimazaki; Kolia Sadeghi; Tomoe Ishikawa; Yuji Ikegaya; Taro Toyoizumi
Journal:  Sci Rep       Date:  2015-04-28       Impact factor: 4.379

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.