Literature DB >> 12215496

Purification and electron microscopic visualization of functional human spliceosomes.

Zhaolan Zhou1, Jeonggu Sim, Jack Griffith, Robin Reed.   

Abstract

Pre-mRNA splicing takes place in a large and highly dynamic complex known as the spliceosome. Here we report the optimization of a maltose-binding protein (MBP) affinity-purification method to isolate functional spliceosomes for electron microscopic analysis. Visualization of the spliceosome preparations revealed distinct 40-60 nm particles. Immunogold-conjugated antibodies to spliceosome components specifically label these particles, which are eliminated by treatment with either RNase or protease. Moreover, spliceosomes assembled on two different pre-mRNAs are indistinguishable. This first visualization of purified functional spliceosomes assembled in vitro reveals striking structural features, including one or more central cavities and multiple elongate lobes.

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Year:  2002        PMID: 12215496      PMCID: PMC129422          DOI: 10.1073/pnas.182427099

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  22 in total

1.  Arrangement of RNA and proteins in the spliceosomal U1 small nuclear ribonucleoprotein particle.

Authors:  H Stark; P Dube; R Lührmann; B Kastner
Journal:  Nature       Date:  2001-01-25       Impact factor: 49.962

2.  Functional association of U2 snRNP with the ATP-independent spliceosomal complex E.

Authors:  R Das; Z Zhou; R Reed
Journal:  Mol Cell       Date:  2000-05       Impact factor: 17.970

3.  The spliceosome: no assembly required?

Authors:  Timothy W Nilsen
Journal:  Mol Cell       Date:  2002-01       Impact factor: 17.970

4.  Composition and functional characterization of the yeast spliceosomal penta-snRNP.

Authors:  Scott W Stevens; Daniel E Ryan; Helen Y Ge; Roger E Moore; Mary K Young; Terry D Lee; John Abelson
Journal:  Mol Cell       Date:  2002-01       Impact factor: 17.970

Review 5.  Pre-mRNA splicing in the new millennium.

Authors:  M L Hastings; A R Krainer
Journal:  Curr Opin Cell Biol       Date:  2001-06       Impact factor: 8.382

Review 6.  Spliceosomal UsnRNP biogenesis, structure and function.

Authors:  C L Will; R Lührmann
Journal:  Curr Opin Cell Biol       Date:  2001-06       Impact factor: 8.382

7.  Purification and characterization of native spliceosomes suitable for three-dimensional structural analysis.

Authors:  Melissa S Jurica; Lawrence J Licklider; Steven R Gygi; Nikolaus Grigorieff; Melissa J Moore
Journal:  RNA       Date:  2002-04       Impact factor: 4.942

8.  Purification and visualization of native spliceosomes.

Authors:  R Reed; J Griffith; T Maniatis
Journal:  Cell       Date:  1988-06-17       Impact factor: 41.582

9.  Sequence-specific interaction of R17 coat protein with its ribonucleic acid binding site.

Authors:  J Carey; V Cameron; P L de Haseth; O C Uhlenbeck
Journal:  Biochemistry       Date:  1983-05-24       Impact factor: 3.162

10.  The human U5-220kD protein (hPrp8) forms a stable RNA-free complex with several U5-specific proteins, including an RNA unwindase, a homologue of ribosomal elongation factor EF-2, and a novel WD-40 protein.

Authors:  T Achsel; K Ahrens; H Brahms; S Teigelkamp; R Lührmann
Journal:  Mol Cell Biol       Date:  1998-11       Impact factor: 4.272

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  35 in total

1.  Antisense-targeted immuno-EM localization of the pre-mRNA path in the spliceosomal C complex.

Authors:  Elmar Wolf; Berthold Kastner; Reinhard Lührmann
Journal:  RNA       Date:  2012-05-24       Impact factor: 4.942

2.  The long noncoding RNAs NEAT1 and MALAT1 bind active chromatin sites.

Authors:  Jason A West; Christopher P Davis; Hongjae Sunwoo; Matthew D Simon; Ruslan I Sadreyev; Peggy I Wang; Michael Y Tolstorukov; Robert E Kingston
Journal:  Mol Cell       Date:  2014-08-21       Impact factor: 17.970

Review 3.  A subset of nuclear receptor coregulators act as coupling proteins during synthesis and maturation of RNA transcripts.

Authors:  Didier Auboeuf; Dennis H Dowhan; Martin Dutertre; Natalia Martin; Susan M Berget; Bert W O'Malley
Journal:  Mol Cell Biol       Date:  2005-07       Impact factor: 4.272

4.  Escaping the nuclear confines: signal-dependent pre-mRNA splicing in anucleate platelets.

Authors:  Melvin M Denis; Neal D Tolley; Michaeline Bunting; Hansjörg Schwertz; Huimiao Jiang; Stephan Lindemann; Christian C Yost; Frederick J Rubner; Kurt H Albertine; Kathryn J Swoboda; Carolyn M Fratto; Emilysa Tolley; Larry W Kraiss; Thomas M McIntyre; Guy A Zimmerman; Andrew S Weyrich
Journal:  Cell       Date:  2005-08-12       Impact factor: 41.582

5.  Improved native affinity purification of RNA.

Authors:  Robert T Batey; Jeffrey S Kieft
Journal:  RNA       Date:  2007-06-04       Impact factor: 4.942

Review 6.  Protein factors in pre-mRNA 3'-end processing.

Authors:  C R Mandel; Y Bai; L Tong
Journal:  Cell Mol Life Sci       Date:  2008-04       Impact factor: 9.261

7.  Exon, intron and splice site locations in the spliceosomal B complex.

Authors:  Elmar Wolf; Berthold Kastner; Jochen Deckert; Christian Merz; Holger Stark; Reinhard Lührmann
Journal:  EMBO J       Date:  2009-06-18       Impact factor: 11.598

8.  Repression of prespliceosome complex formation at two distinct steps by Fox-1/Fox-2 proteins.

Authors:  Hua-Lin Zhou; Hua Lou
Journal:  Mol Cell Biol       Date:  2008-06-23       Impact factor: 4.272

9.  Polypyrimidine tract binding protein blocks the 5' splice site-dependent assembly of U2AF and the prespliceosomal E complex.

Authors:  Shalini Sharma; Arnold M Falick; Douglas L Black
Journal:  Mol Cell       Date:  2005-08-19       Impact factor: 17.970

10.  In vivo expression and purification of aptamer-tagged small RNA regulators.

Authors:  Nelly Said; Renate Rieder; Robert Hurwitz; Jochen Deckert; Henning Urlaub; Jörg Vogel
Journal:  Nucleic Acids Res       Date:  2009-09-02       Impact factor: 16.971

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