Literature DB >> 18158581

Protein factors in pre-mRNA 3'-end processing.

C R Mandel1, Y Bai, L Tong.   

Abstract

Most eukaryotic mRNA precursors (premRNAs) must undergo extensive processing, including cleavage and polyadenylation at the 3'-end. Processing at the 3'-end is controlled by sequence elements in the pre-mRNA (cis elements) as well as protein factors. Despite the seeming biochemical simplicity of the processing reactions, more than 14 proteins have been identified for the mammalian complex, and more than 20 proteins have been identified for the yeast complex. The 3'-end processing machinery also has important roles in transcription and splicing. The mammalian machinery contains several sub-complexes, including cleavage and polyadenylation specificity factor, cleavage stimulation factor, cleavage factor I, and cleavage factor II. Additional protein factors include poly(A) polymerase, poly(A)-binding protein, symplekin, and the C-terminal domain of RNA polymerase II largest subunit. The yeast machinery includes cleavage factor IA, cleavage factor IB, and cleavage and polyadenylation factor.

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Year:  2008        PMID: 18158581      PMCID: PMC2742908          DOI: 10.1007/s00018-007-7474-3

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  231 in total

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3.  Recognition of polyadenylation sites in yeast pre-mRNAs by cleavage and polyadenylation factor.

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Review 4.  How introns influence and enhance eukaryotic gene expression.

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5.  A novel nuclear human poly(A) polymerase (PAP), PAP gamma.

Authors:  C B Kyriakopoulou; H Nordvarg; A Virtanen
Journal:  J Biol Chem       Date:  2001-06-28       Impact factor: 5.157

6.  Rna15 interaction with the A-rich yeast polyadenylation signal is an essential step in mRNA 3'-end formation.

Authors:  S Gross; C L Moore
Journal:  Mol Cell Biol       Date:  2001-12       Impact factor: 4.272

7.  COMPASS: a complex of proteins associated with a trithorax-related SET domain protein.

Authors:  T Miller; N J Krogan; J Dover; H Erdjument-Bromage; P Tempst; M Johnston; J F Greenblatt; A Shilatifard
Journal:  Proc Natl Acad Sci U S A       Date:  2001-10-30       Impact factor: 11.205

8.  Functional interactions between the transcription and mRNA 3' end processing machineries mediated by Ssu72 and Sub1.

Authors:  Xiaoyuan He; Asad U Khan; Hailing Cheng; Donald L Pappas; Michael Hampsey; Claire L Moore
Journal:  Genes Dev       Date:  2003-04-15       Impact factor: 11.361

9.  The 3'-end-processing factor CPSF is required for the splicing of single-intron pre-mRNAs in vivo.

Authors:  Y Li; Z Y Chen; W Wang; C C Baker; R M Krug
Journal:  RNA       Date:  2001-06       Impact factor: 4.942

10.  Structural basis for the molecular recognition between human splicing factors U2AF65 and SF1/mBBP.

Authors:  Philipp Selenko; Goran Gregorovic; Remco Sprangers; Gunter Stier; Zakaria Rhani; Angela Krämer; Michael Sattler
Journal:  Mol Cell       Date:  2003-04       Impact factor: 17.970

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  205 in total

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2.  snRNA 3' end formation requires heterodimeric association of integrator subunits.

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3.  Crystal structure of the Rna14-Rna15 complex.

Authors:  Ashley R Paulson; Liang Tong
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4.  Coupled RNA polymerase II transcription and 3' end formation with yeast whole-cell extracts.

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Journal:  RNA       Date:  2010-09-01       Impact factor: 4.942

Review 5.  Novel endoribonucleases as central players in various pathways of eukaryotic RNA metabolism.

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6.  Identification of nuclear phosphatidylinositol 4,5-bisphosphate-interacting proteins by neomycin extraction.

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Journal:  Mol Cell Proteomics       Date:  2010-11-03       Impact factor: 5.911

Review 7.  To polyadenylate or to deadenylate: that is the question.

Authors:  Xiaokan Zhang; Anders Virtanen; Frida E Kleiman
Journal:  Cell Cycle       Date:  2010-11-15       Impact factor: 4.534

8.  In vivo SELEX reveals novel sequence and structural determinants of Nrd1-Nab3-Sen1-dependent transcription termination.

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Journal:  EMBO J       Date:  2012-08-28       Impact factor: 11.598

9.  Structure of histone mRNA stem-loop, human stem-loop binding protein, and 3'hExo ternary complex.

Authors:  Dazhi Tan; William F Marzluff; Zbigniew Dominski; Liang Tong
Journal:  Science       Date:  2013-01-18       Impact factor: 47.728

10.  Global analysis of mRNA isoform half-lives reveals stabilizing and destabilizing elements in yeast.

Authors:  Joseph V Geisberg; Zarmik Moqtaderi; Xiaochun Fan; Fatih Ozsolak; Kevin Struhl
Journal:  Cell       Date:  2014-02-13       Impact factor: 41.582

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