Literature DB >> 12197303

A review of DNA sequencing techniques.

Lilian T C França1, Emanuel Carrilho, Tarso B L Kist.   

Abstract

The four best known DNA sequencing techniques are reviewed. Important practical issues covered are read-length, speed, accuracy, throughput, cost, as well as the automation of sample handling and preparation. The methods reviewed are: (i) the Sanger method and its most important variants (enzymic methods); (ii) the Maxam & Gilbert method and other chemical methods; (iii) the Pyrosequencing method--DNA sequencing in real time by the detection of released pyrophosphate (PPi); and (iv) single molecule sequencing with exonuclease (exonuclease digestion of a single molecule composed of a single strand of fluorescently labelled deoxynucleotides). Each method is briefly described, the current literature is covered, advantages, disadvantages, and the most suitable applications of each method are discussed.

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Year:  2002        PMID: 12197303     DOI: 10.1017/s0033583502003797

Source DB:  PubMed          Journal:  Q Rev Biophys        ISSN: 0033-5835            Impact factor:   5.318


  30 in total

1.  Nanometer-localized multiple single-molecule fluorescence microscopy.

Authors:  Xiaohui Qu; David Wu; Laurens Mets; Norbert F Scherer
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-26       Impact factor: 11.205

2.  Synthesis of 8-Heteroaryl-2'-deoxyguanosine Derivatives.

Authors:  Gerard Hobley; Vladimir Gubala; María Del C Rivera-Sánchez; José M Rivera
Journal:  Synlett       Date:  2008-06-01       Impact factor: 2.454

3.  Real-time detection of polymerase activity using supercritical angle fluorescence.

Authors:  Alexander Krieg; Thomas Ruckstuhl; Stephan Laib; Stefan Seeger
Journal:  J Fluoresc       Date:  2004-01       Impact factor: 2.217

4.  Direct electrical detection of DNA synthesis.

Authors:  Nader Pourmand; Miloslav Karhanek; Henrik H J Persson; Chris D Webb; Thomas H Lee; Alexandra Zahradníková; Ronald W Davis
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-13       Impact factor: 11.205

5.  MEGAN analysis of metagenomic data.

Authors:  Daniel H Huson; Alexander F Auch; Ji Qi; Stephan C Schuster
Journal:  Genome Res       Date:  2007-01-25       Impact factor: 9.043

6.  Theoretical electrical conductivity of hydrogen-bonded benzamide-derived molecules and single DNA bases.

Authors:  Xiang Chen
Journal:  J Biol Phys       Date:  2013-06-13       Impact factor: 1.365

7.  Large-scale pyrosequencing of synthetic DNA: a comparison with results from Sanger dideoxy sequencing.

Authors:  Baback Gharizadeh; Zelek S Herman; Robert G Eason; Olufisayo Jejelowo; Nader Pourmand
Journal:  Electrophoresis       Date:  2006-08       Impact factor: 3.535

Review 8.  Landscape of next-generation sequencing technologies.

Authors:  Thomas P Niedringhaus; Denitsa Milanova; Matthew B Kerby; Michael P Snyder; Annelise E Barron
Journal:  Anal Chem       Date:  2011-05-25       Impact factor: 6.986

9.  Diagnostic Screening Workflow for Mutations in the BRCA1 and BRCA2 Genes.

Authors:  Stella Lai; Clare Brookes; Debra O Prosser; Chuan-Ching Lan; Elaine Doherty; Donald R Love
Journal:  Sultan Qaboos Univ Med J       Date:  2015-01-21

10.  Reconstructed evolutionary adaptive paths give polymerases accepting reversible terminators for sequencing and SNP detection.

Authors:  Fei Chen; Eric A Gaucher; Nicole A Leal; Daniel Hutter; Stephanie A Havemann; Sridhar Govindarajan; Eric A Ortlund; Steven A Benner
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-11       Impact factor: 11.205

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