Literature DB >> 12188639

Toward an RNaseA mimic: A DNAzyme with imidazoles and cationic amines.

Leonard Lermer1, Yoann Roupioz, Richard Ting, David M Perrin.   

Abstract

Site-specific RNA cleavage has received considerable attention over the years. Directed synthesis to append imidazoles or amines or both to oligonucleotides to target specific RNA cleavage represents an exciting avenue of research. However, to date catalysis by such synthetic constructs, particularly in terms of turnover, has been difficult to observe. This is the first report of a truly catalytic M2+-independent DNAzyme synthetically modified with imidazoles and cationic amines that would seem to mimic RNaseA. This work now demonstrates how synthetic organic chemistry, when merged with combinatorial selection, can result in a new class of DNAzymes that meets the ongoing synthetic challenges for developing relatively small biomimetic catalysts.

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Year:  2002        PMID: 12188639     DOI: 10.1021/ja0205075

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  24 in total

1.  Zn2+-dependent deoxyribozymes that form natural and unnatural RNA linkages.

Authors:  Kelly A Hoadley; Whitney E Purtha; Amanda C Wolf; Amber Flynn-Charlebois; Scott K Silverman
Journal:  Biochemistry       Date:  2005-06-28       Impact factor: 3.162

2.  Synthesis of functionalised nucleosides for incorporation into nucleic acid-based serine protease mimics.

Authors:  Mieke A Catry; Annemieke Madder
Journal:  Molecules       Date:  2007-01-31       Impact factor: 4.411

3.  The expanding view of RNA and DNA function.

Authors:  Ronald R Breaker; Gerald F Joyce
Journal:  Chem Biol       Date:  2014-09-18

Review 4.  Catalytic DNA: Scope, Applications, and Biochemistry of Deoxyribozymes.

Authors:  Scott K Silverman
Journal:  Trends Biochem Sci       Date:  2016-05-25       Impact factor: 13.807

5.  Tethered imidazole mediated duplex stabilization and its potential for aptamer stabilization.

Authors:  Lars Verdonck; Dieter Buyst; Anne-Mare de Vries; Vicky Gheerardijn; Annemieke Madder; José C Martins
Journal:  Nucleic Acids Res       Date:  2018-12-14       Impact factor: 16.971

6.  Substrate specificity and kinetic framework of a DNAzyme with an expanded chemical repertoire: a putative RNaseA mimic that catalyzes RNA hydrolysis independent of a divalent metal cation.

Authors:  Richard Ting; Jason M Thomas; Leonard Lermer; David M Perrin
Journal:  Nucleic Acids Res       Date:  2004-12-29       Impact factor: 16.971

Review 7.  DNA as a versatile chemical component for catalysis, encoding, and stereocontrol.

Authors:  Scott K Silverman
Journal:  Angew Chem Int Ed Engl       Date:  2010-09-24       Impact factor: 15.336

8.  Polyamine derivatives as selective RNaseA mimics.

Authors:  Sandra Fouace; Cyril Gaudin; Sylvie Picard; Sophie Corvaisier; Jacques Renault; Bertrand Carboni; Brice Felden
Journal:  Nucleic Acids Res       Date:  2004-01-02       Impact factor: 16.971

9.  Sequence-specific cleavage of RNA in the absence of divalent metal ions by a DNAzyme incorporating imidazolyl and amino functionalities.

Authors:  Alexander V Sidorov; Jane A Grasby; David M Williams
Journal:  Nucleic Acids Res       Date:  2004-03-05       Impact factor: 16.971

10.  A self-cleaving DNA enzyme modified with amines, guanidines and imidazoles operates independently of divalent metal cations (M2+).

Authors:  Marcel Hollenstein; Christopher J Hipolito; Curtis H Lam; David M Perrin
Journal:  Nucleic Acids Res       Date:  2009-01-19       Impact factor: 16.971

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