Literature DB >> 12181775

Power calculations for a general class of family-based association tests: dichotomous traits.

Christoph Lange1, Nan M Laird.   

Abstract

Using large-sample theory, we present a unified approach to power calculations for family-based association tests. Currently available methods for power calculations are restricted to special designs or require approximations or simulations. Our analytical approach to power calculations is broadly applicable in many settings. We discuss power calculations for two scenarios that have high practical relevance and in which power previously could only be assessed by simulation studies or by approximations: (1) studies using both affected and unaffected offspring and (2) studies with missing parental information. When the population prevalence is high, it can be worthwhile to genotype unaffected offspring. For many scenarios, high power can be achieved with reasonable sample sizes, even when no parental information is available.

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Year:  2002        PMID: 12181775      PMCID: PMC379194          DOI: 10.1086/342406

Source DB:  PubMed          Journal:  Am J Hum Genet        ISSN: 0002-9297            Impact factor:   11.025


  18 in total

1.  Using exact P values to compare the power between the reconstruction-combined transmission/disequilibrium test and the sib transmission/disequilibrium test.

Authors:  M Knapp
Journal:  Am J Hum Genet       Date:  1999-10       Impact factor: 11.025

2.  A note on power approximations for the transmission/disequilibrium test.

Authors:  M Knapp
Journal:  Am J Hum Genet       Date:  1999-04       Impact factor: 11.025

3.  Implementing a unified approach to family-based tests of association.

Authors:  N M Laird; S Horvath; X Xu
Journal:  Genet Epidemiol       Date:  2000       Impact factor: 2.135

Review 4.  Genetic association mapping at the crossroads: which test and why? Overview and practical guidelines.

Authors:  Thomas G Schulze; Francis J McMahon
Journal:  Am J Med Genet       Date:  2002-01-08

5.  Genetic association mapping based on discordant sib pairs: the discordant-alleles test.

Authors:  M Boehnke; C D Langefeld
Journal:  Am J Hum Genet       Date:  1998-04       Impact factor: 11.025

6.  A sibship test for linkage in the presence of association: the sib transmission/disequilibrium test.

Authors:  R S Spielman; W J Ewens
Journal:  Am J Hum Genet       Date:  1998-02       Impact factor: 11.025

7.  Genomewide transmission/disequilibrium testing--consideration of the genotypic relative risks at disease loci.

Authors:  N J Camp
Journal:  Am J Hum Genet       Date:  1997-12       Impact factor: 11.025

8.  The future of genetic studies of complex human diseases.

Authors:  N Risch; K Merikangas
Journal:  Science       Date:  1996-09-13       Impact factor: 47.728

Review 9.  Searching for genetic determinants in the new millennium.

Authors:  N J Risch
Journal:  Nature       Date:  2000-06-15       Impact factor: 49.962

10.  A discordant-sibship test for disequilibrium and linkage: no need for parental data.

Authors:  S Horvath; N M Laird
Journal:  Am J Hum Genet       Date:  1998-12       Impact factor: 11.025

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  50 in total

1.  Power and design considerations for a general class of family-based association tests: quantitative traits.

Authors:  Christoph Lange; Dawn L DeMeo; Nan M Laird
Journal:  Am J Hum Genet       Date:  2002-11-21       Impact factor: 11.025

2.  Power evaluations for family-based tests of association with incomplete parental genotypes.

Authors:  Qiong Yang; Xin Xu; Nan Laird
Journal:  Genetics       Date:  2003-05       Impact factor: 4.562

3.  IL10 gene polymorphisms are associated with asthma phenotypes in children.

Authors:  Helen Lyon; Christoph Lange; Stephen Lake; Edwin K Silverman; Adrienne G Randolph; David Kwiatkowski; Benjamin A Raby; Ross Lazarus; Katy M Weiland; Nan Laird; Scott T Weiss
Journal:  Genet Epidemiol       Date:  2004-02       Impact factor: 2.135

4.  PBAT: tools for family-based association studies.

Authors:  Christoph Lange; Dawn DeMeo; Edwin K Silverman; Scott T Weiss; Nan M Laird
Journal:  Am J Hum Genet       Date:  2004-02       Impact factor: 11.025

5.  Using the noninformative families in family-based association tests: a powerful new testing strategy.

Authors:  Christoph Lange; Dawn DeMeo; Edwin K Silverman; Scott T Weiss; Nan M Laird
Journal:  Am J Hum Genet       Date:  2003-09-18       Impact factor: 11.025

6.  Power for genetic association studies with random allele frequencies and genotype distributions.

Authors:  Walter T Ambrosius; Ethan M Lange; Carl D Langefeld
Journal:  Am J Hum Genet       Date:  2004-03-12       Impact factor: 11.025

7.  Power calculations for likelihood ratio tests for offspring genotype risks, maternal effects, and parent-of-origin (POO) effects in the presence of missing parental genotypes when unaffected siblings are available.

Authors:  E Rampersaud; R W Morris; C R Weinberg; M C Speer; E R Martin
Journal:  Genet Epidemiol       Date:  2007-01       Impact factor: 2.135

8.  The neuronal sortilin-related receptor SORL1 is genetically associated with Alzheimer disease.

Authors:  Ekaterina Rogaeva; Yan Meng; Joseph H Lee; Yongjun Gu; Toshitaka Kawarai; Fanggeng Zou; Taiichi Katayama; Clinton T Baldwin; Rong Cheng; Hiroshi Hasegawa; Fusheng Chen; Nobuto Shibata; Kathryn L Lunetta; Raphaelle Pardossi-Piquard; Christopher Bohm; Yosuke Wakutani; L Adrienne Cupples; Karen T Cuenco; Robert C Green; Lorenzo Pinessi; Innocenzo Rainero; Sandro Sorbi; Amalia Bruni; Ranjan Duara; Robert P Friedland; Rivka Inzelberg; Wolfgang Hampe; Hideaki Bujo; You-Qiang Song; Olav M Andersen; Thomas E Willnow; Neill Graff-Radford; Ronald C Petersen; Dennis Dickson; Sandy D Der; Paul E Fraser; Gerold Schmitt-Ulms; Steven Younkin; Richard Mayeux; Lindsay A Farrer; Peter St George-Hyslop
Journal:  Nat Genet       Date:  2007-01-14       Impact factor: 38.330

9.  Association of the cannabinoid receptor gene (CNR1) with ADHD and post-traumatic stress disorder.

Authors:  Ake T Lu; Matthew N Ogdie; Marjo-Ritta Järvelin; Irma K Moilanen; Sandra K Loo; James T McCracken; James J McGough; May H Yang; Leena Peltonen; Stanley F Nelson; Rita M Cantor; Susan L Smalley
Journal:  Am J Med Genet B Neuropsychiatr Genet       Date:  2008-12-05       Impact factor: 3.568

10.  Impact of population stratification on family-based association tests with longitudinal measurements.

Authors:  Xiao Ding; Scott Weiss; Benjamin Raby; Christoph Lange; Nan M Laird
Journal:  Stat Appl Genet Mol Biol       Date:  2009-02-12
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