Literature DB >> 12454799

Power and design considerations for a general class of family-based association tests: quantitative traits.

Christoph Lange1, Dawn L DeMeo, Nan M Laird.   

Abstract

In the present article, we address family-based association tests (FBATs) for quantitative traits. We propose an approach to analytical power and sample-size calculations for general FBATs; this approach can be applied to virtually any scenario (missing parental information, multiple offspring per family, etc.). The power calculations are used to discuss optimal choices of the phenotypes for the FBAT statistic and its power's dependence on ascertainment conditions, on study design, and on the correct specification of the distributional assumptions for the phenotypes. We also compare the general FBAT approach with PDT and QTDT. The practical relevance of our theoretical considerations is illustrated by their application to an asthma study.

Mesh:

Year:  2002        PMID: 12454799      PMCID: PMC378574          DOI: 10.1086/344696

Source DB:  PubMed          Journal:  Am J Hum Genet        ISSN: 0002-9297            Impact factor:   11.025


  19 in total

1.  The Childhood Asthma Management Program (CAMP): design, rationale, and methods. Childhood Asthma Management Program Research Group.

Authors: 
Journal:  Control Clin Trials       Date:  1999-02

2.  The power to detect linkage disequilibrium with quantitative traits in selected samples.

Authors:  G R Abecasis; W O Cookson; L R Cardon
Journal:  Am J Hum Genet       Date:  2001-05-08       Impact factor: 11.025

3.  Sibling-based tests of linkage and association for quantitative traits.

Authors:  D B Allison; M Heo; N Kaplan; E R Martin
Journal:  Am J Hum Genet       Date:  1999-06       Impact factor: 11.025

4.  Power calculations for a general class of family-based association tests: dichotomous traits.

Authors:  Christoph Lange; Nan M Laird
Journal:  Am J Hum Genet       Date:  2002-08-12       Impact factor: 11.025

5.  Mapping quantitative trait loci with extreme discordant sib pairs: sampling considerations.

Authors:  N J Risch; H Zhang
Journal:  Am J Hum Genet       Date:  1996-04       Impact factor: 11.025

6.  Combined linkage and association sib-pair analysis for quantitative traits.

Authors:  D W Fulker; S S Cherny; P C Sham; J K Hewitt
Journal:  Am J Hum Genet       Date:  1999-01       Impact factor: 11.025

7.  A transmission disequilibrium test for quantitative trait loci.

Authors:  D Rabinowitz
Journal:  Hum Hered       Date:  1997 Nov-Dec       Impact factor: 0.444

8.  General score tests for associations of genetic markers with disease using cases and their parents.

Authors:  D J Schaid
Journal:  Genet Epidemiol       Date:  1996       Impact factor: 2.135

9.  Transmission-disequilibrium tests for quantitative traits.

Authors:  D B Allison
Journal:  Am J Hum Genet       Date:  1997-03       Impact factor: 11.025

10.  Transmission test for linkage disequilibrium: the insulin gene region and insulin-dependent diabetes mellitus (IDDM).

Authors:  R S Spielman; R E McGinnis; W J Ewens
Journal:  Am J Hum Genet       Date:  1993-03       Impact factor: 11.025

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  61 in total

1.  Power evaluations for family-based tests of association with incomplete parental genotypes.

Authors:  Qiong Yang; Xin Xu; Nan Laird
Journal:  Genetics       Date:  2003-05       Impact factor: 4.562

2.  IL10 gene polymorphisms are associated with asthma phenotypes in children.

Authors:  Helen Lyon; Christoph Lange; Stephen Lake; Edwin K Silverman; Adrienne G Randolph; David Kwiatkowski; Benjamin A Raby; Ross Lazarus; Katy M Weiland; Nan Laird; Scott T Weiss
Journal:  Genet Epidemiol       Date:  2004-02       Impact factor: 2.135

3.  PBAT: tools for family-based association studies.

Authors:  Christoph Lange; Dawn DeMeo; Edwin K Silverman; Scott T Weiss; Nan M Laird
Journal:  Am J Hum Genet       Date:  2004-02       Impact factor: 11.025

4.  Using the noninformative families in family-based association tests: a powerful new testing strategy.

Authors:  Christoph Lange; Dawn DeMeo; Edwin K Silverman; Scott T Weiss; Nan M Laird
Journal:  Am J Hum Genet       Date:  2003-09-18       Impact factor: 11.025

Review 5.  Overview of techniques to account for confounding due to population stratification and cryptic relatedness in genomic data association analyses.

Authors:  M J Sillanpää
Journal:  Heredity (Edinb)       Date:  2010-07-14       Impact factor: 3.821

6.  Single-nucleotide polymorphism rs498055 on chromosome 10q24 is not associated with Alzheimer disease in two independent family samples.

Authors:  Lars Bertram; Monica Hsiao; Christoph Lange; Deborah Blacker; Rudolph E Tanzi
Journal:  Am J Hum Genet       Date:  2006-07       Impact factor: 11.025

7.  Is alpha-T catenin (VR22) an Alzheimer's disease risk gene?

Authors:  Lars Bertram; Kristina Mullin; Michele Parkinson; Monica Hsiao; Thomas J Moscarillo; Steven L Wagner; K David Becker; Gonul Velicelebi; Deborah Blacker; Rudolph E Tanzi
Journal:  J Med Genet       Date:  2007-01       Impact factor: 6.318

8.  Genomewide rapid association using mixed model and regression: a fast and simple method for genomewide pedigree-based quantitative trait loci association analysis.

Authors:  Yurii S Aulchenko; Dirk-Jan de Koning; Chris Haley
Journal:  Genetics       Date:  2007-07-29       Impact factor: 4.562

9.  Genes controlling affiliative behavior as candidate genes for autism.

Authors:  Carolyn M Yrigollen; Summer S Han; Anna Kochetkova; Tammy Babitz; Joseph T Chang; Fred R Volkmar; James F Leckman; Elena L Grigorenko
Journal:  Biol Psychiatry       Date:  2008-01-22       Impact factor: 13.382

10.  The association between cannabinoid receptor 1 gene (CNR1) and cannabis dependence symptoms in adolescents and young adults.

Authors:  Christie A Hartman; Christian J Hopfer; Brett Haberstick; Soo Hyun Rhee; Thomas J Crowley; Robin P Corley; John K Hewitt; Marissa A Ehringer
Journal:  Drug Alcohol Depend       Date:  2009-05-14       Impact factor: 4.492

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