Literature DB >> 12177422

Creating nanocavities of tunable sizes: hollow helices.

Bing Gong1, Huaqiang Zeng, Jin Zhu, Lihua Yuan, Yaohua Han, Shizhi Cheng, Mako Furukawa, Rubén D Parra, Andrey Y Kovalevsky, Jeffrey L Mills, Ewa Skrzypczak-Jankun, Suzana Martinovic, Richard D Smith, Chong Zheng, Thomas Szyperski, Xiao Cheng Zeng, Lihua Yua.   

Abstract

A general strategy for creating nanocavities with tunable sizes based on the folding of unnatural oligomers is presented. The backbones of these oligomers are rigidified by localized, three-center intramolecular hydrogen bonds, which lead to well-defined hollow helical conformations. Changing the curvature of the oligomer backbone leads to the adjustment of the interior cavity size. Helices with interior cavities of 10 A to >30 A across, the largest thus far formed by the folding of unnatural foldamers, are generated. Cavities of these sizes are usually seen at the tertiary and quaternary structural levels of proteins. The ability to tune molecular dimensions without altering the underlying topology is seen in few natural and unnatural foldamer systems.

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Mesh:

Year:  2002        PMID: 12177422      PMCID: PMC129312          DOI: 10.1073/pnas.162277099

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  8 in total

Review 1.  A field guide to foldamers.

Authors:  D J Hill; M J Mio; R B Prince; T S Hughes; J S Moore
Journal:  Chem Rev       Date:  2001-12       Impact factor: 60.622

2.  Stable three-center hydrogen bonding in a partially rigidified structure.

Authors:  R D Parra; H Zeng; J Zhu; C Zheng; X C Zeng; B Gong
Journal:  Chemistry       Date:  2001-10-15       Impact factor: 5.236

3.  Formation of ordered ice nanotubes inside carbon nanotubes.

Authors:  K Koga; G T Gao; H Tanaka; X C Zeng
Journal:  Nature       Date:  2001-08-23       Impact factor: 49.962

4.  Foldamers as dynamic receptors: probing the mechanism of molecular association between helical oligomers and rodlike ligands.

Authors:  Aya Tanatani; Thomas S Hughes; Jeffrey S Moore
Journal:  Angew Chem Int Ed Engl       Date:  2002-01-18       Impact factor: 15.336

5.  Peptoid oligomers with alpha-chiral, aromatic side chains: sequence requirements for the formation of stable peptoid helices.

Authors:  C W Wu; T J Sanborn; K Huang; R N Zuckermann; A E Barron
Journal:  J Am Chem Soc       Date:  2001-07-18       Impact factor: 15.419

6.  Residue-based control of helix shape in beta-peptide oligomers.

Authors:  D H Appella; L A Christianson; D A Klein; D R Powell; X Huang; J J Barchi; S H Gellman
Journal:  Nature       Date:  1997-05-22       Impact factor: 49.962

7.  Encoded Helical Self-Organization and Self-Assembly into Helical Fibers of an Oligoheterocyclic Pyridine - Pyridazine Molecular Strand.

Authors: 
Journal:  Angew Chem Int Ed Engl       Date:  2000-01       Impact factor: 15.336

8.  Water conduction through the hydrophobic channel of a carbon nanotube.

Authors:  G Hummer; J C Rasaiah; J P Noworyta
Journal:  Nature       Date:  2001-11-08       Impact factor: 49.962

  8 in total
  6 in total

Review 1.  Foldamers as versatile frameworks for the design and evolution of function.

Authors:  Catherine M Goodman; Sungwook Choi; Scott Shandler; William F DeGrado
Journal:  Nat Chem Biol       Date:  2007-05       Impact factor: 15.040

2.  First-principles design of nanomachines.

Authors:  Jayanth R Banavar; Marek Cieplak; Trinh Xuan Hoang; Amos Maritan
Journal:  Proc Natl Acad Sci U S A       Date:  2009-04-09       Impact factor: 11.205

3.  Helix formation in preorganized beta/gamma-peptide foldamers: hydrogen-bond analogy to the alpha-helix without alpha-amino acid residues.

Authors:  Li Guo; Aaron M Almeida; Weicheng Zhang; Andrew G Reidenbach; Soo Hyuk Choi; Ilia A Guzei; Samuel H Gellman
Journal:  J Am Chem Soc       Date:  2010-06-16       Impact factor: 15.419

4.  A versatile living polymerization method for aromatic amides.

Authors:  Subhajit Pal; Dinh Phuong Trinh Nguyen; Angélique Molliet; Mahshid Alizadeh; Aurélien Crochet; Roberto D Ortuso; Alke Petri-Fink; Andreas F M Kilbinger
Journal:  Nat Chem       Date:  2021-06-08       Impact factor: 24.427

5.  Large-scale and chromatography-free synthesis of an octameric quinoline-based aromatic amide helical foldamer.

Authors:  Ting Qi; Tiny Deschrijver; Ivan Huc
Journal:  Nat Protoc       Date:  2013-03-14       Impact factor: 13.491

6.  Conformationally Programmable Chiral Foldamers with Compact and Extended Domains Controlled by Monomer Structure.

Authors:  Zachariah Lockhart; Peter C Knipe
Journal:  Angew Chem Int Ed Engl       Date:  2018-06-12       Impact factor: 15.336

  6 in total

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