Literature DB >> 17438550

Foldamers as versatile frameworks for the design and evolution of function.

Catherine M Goodman1, Sungwook Choi, Scott Shandler, William F DeGrado.   

Abstract

Foldamers are sequence-specific oligomers akin to peptides, proteins and oligonucleotides that fold into well-defined three-dimensional structures. They offer the chemical biologist a broad pallet of building blocks for the construction of molecules that test and extend our understanding of protein folding and function. Foldamers also provide templates for presenting complex arrays of functional groups in virtually unlimited geometrical patterns, thereby presenting attractive opportunities for the design of molecules that bind in a sequence- and structure-specific manner to oligosaccharides, nucleic acids, membranes and proteins. We summarize recent advances and highlight the future applications and challenges of this rapidly expanding field.

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Year:  2007        PMID: 17438550      PMCID: PMC3810020          DOI: 10.1038/nchembio876

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  126 in total

1.  Chimeric (alpha/beta + alpha)-peptide ligands for the BH3-recognition cleft of Bcl-XL: critical role of the molecular scaffold in protein surface recognition.

Authors:  Jack D Sadowsky; Margaret A Schmitt; Hee-Seung Lee; Naoki Umezawa; Shaomeng Wang; York Tomita; Samuel H Gellman
Journal:  J Am Chem Soc       Date:  2005-08-31       Impact factor: 15.419

2.  Bacterial cell penetration by beta3-oligohomoarginines: indications for passive transfer through the lipid bilayer.

Authors:  Birgit Geueke; Kenji Namoto; Irina Agarkova; Jean-Claude Perriard; Hans-Peter E Kohler; Dieter Seebach
Journal:  Chembiochem       Date:  2005-06       Impact factor: 3.164

3.  Helix bundle quaternary structure from alpha/beta-peptide foldamers.

Authors:  W Seth Horne; Joshua L Price; James L Keck; Samuel H Gellman
Journal:  J Am Chem Soc       Date:  2007-03-16       Impact factor: 15.419

Review 4.  Prediction and design of macromolecular structures and interactions.

Authors:  David Baker
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2006-03-29       Impact factor: 6.237

5.  Electron spin resonance of TOAC labeled peptides: folding transitions and high frequency spectroscopy.

Authors:  J C McNulty; J L Silapie; M Carnevali; C T Farrar; R G Griffin; F Formaggio; M Crisma; C Toniolo; G L Millhauser
Journal:  Biopolymers       Date:  2000       Impact factor: 2.505

6.  T cell determinants incorporating beta-amino acid residues are protease resistant and remain immunogenic in vivo.

Authors:  Andrew I Webb; Michelle A Dunstone; Nicholas A Williamson; Jason D Price; Andrea de Kauwe; Weisan Chen; Aaron Oakley; Patrick Perlmutter; James McCluskey; Marie-Isabel Aguilar; Jamie Rossjohn; Anthony W Purcell
Journal:  J Immunol       Date:  2005-09-15       Impact factor: 5.422

7.  Alpha/3(10)-helix transitions in alpha-methylalanine homopeptides: conformational transition pathway and potential of mean force.

Authors:  S E Huston; G R Marshall
Journal:  Biopolymers       Date:  1994-01       Impact factor: 2.505

8.  Helix-forming carbohydrate amino acids.

Authors:  Timothy D W Claridge; Daniel D Long; Christopher M Baker; Barbara Odell; Guy H Grant; Alison A Edwards; George E Tranter; George W J Fleet; Martin D Smith
Journal:  J Org Chem       Date:  2005-03-18       Impact factor: 4.354

9.  Relationship between side chain structure and 14-helix stability of beta3-peptides in water.

Authors:  Joshua A Kritzer; Julian Tirado-Rives; Scott A Hart; James D Lear; William L Jorgensen; Alanna Schepartz
Journal:  J Am Chem Soc       Date:  2005-01-12       Impact factor: 15.419

10.  Backbone-rigidified oligo(m-phenylene ethynylenes).

Authors:  Xiaowu Yang; Lihua Yuan; Kazuhiro Yamato; Amy L Brown; Wen Feng; Mako Furukawa; Xiao Cheng Zeng; Bing Gong
Journal:  J Am Chem Soc       Date:  2004-03-17       Impact factor: 15.419

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  148 in total

1.  Extending foldamer design beyond α-helix mimicry: α/β-peptide inhibitors of vascular endothelial growth factor signaling.

Authors:  Holly S Haase; Kimberly J Peterson-Kaufman; Sheeny K Lan Levengood; James W Checco; William L Murphy; Samuel H Gellman
Journal:  J Am Chem Soc       Date:  2012-05-01       Impact factor: 15.419

2.  Construction of peptoids with all trans-amide backbones and peptoid reverse turns via the tactical incorporation of N-aryl side chains capable of hydrogen bonding.

Authors:  Joseph R Stringer; J Aaron Crapster; Ilia A Guzei; Helen E Blackwell
Journal:  J Org Chem       Date:  2010-09-17       Impact factor: 4.354

3.  Shaping quaternary assemblies of water-soluble non-peptide helical foldamers by sequence manipulation.

Authors:  Gavin W Collie; Karolina Pulka-Ziach; Caterina M Lombardo; Juliette Fremaux; Frédéric Rosu; Marion Decossas; Laura Mauran; Olivier Lambert; Valérie Gabelica; Cameron D Mackereth; Gilles Guichard
Journal:  Nat Chem       Date:  2015-09-28       Impact factor: 24.427

4.  Asymmetric synthesis of enantiopure isoxazolidinone monomers for the synthesis of β-oligopeptides by chemoselective amide ligation.

Authors:  M Elisa Juarez-Garcia; Shouyun Yu; Jeffrey W Bode
Journal:  Tetrahedron       Date:  2010-06-26       Impact factor: 2.457

5.  A spin-1 representation for dual-funnel energy landscapes.

Authors:  Justin E Elenewski; Kirill A Velizhanin; Michael Zwolak
Journal:  J Chem Phys       Date:  2018-07-21       Impact factor: 3.488

6.  The role of hydrophobicity in the antimicrobial and hemolytic activities of polymethacrylate derivatives.

Authors:  Kenichi Kuroda; Gregory A Caputo; William F DeGrado
Journal:  Chemistry       Date:  2009       Impact factor: 5.236

7.  Exploring the Functional Consequences of Protein Backbone Alteration in Ubiquitin through Native Chemical Ligation.

Authors:  Halina M Werner; Samuel K Estabrooks; G Michael Preston; Jeffrey L Brodsky; W Seth Horne
Journal:  Chembiochem       Date:  2019-08-23       Impact factor: 3.164

Review 8.  Protein Domain Mimics as Modulators of Protein-Protein Interactions.

Authors:  Nicholas Sawyer; Andrew M Watkins; Paramjit S Arora
Journal:  Acc Chem Res       Date:  2017-05-31       Impact factor: 22.384

9.  Biophysical and structural characterization of a robust octameric beta-peptide bundle.

Authors:  Jessica L Goodman; E James Petersson; Douglas S Daniels; Jade X Qiu; Alanna Schepartz
Journal:  J Am Chem Soc       Date:  2007-11-07       Impact factor: 15.419

10.  De novo structure prediction and experimental characterization of folded peptoid oligomers.

Authors:  Glenn L Butterfoss; Barney Yoo; Jonathan N Jaworski; Ilya Chorny; Ken A Dill; Ronald N Zuckermann; Richard Bonneau; Kent Kirshenbaum; Vincent A Voelz
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-20       Impact factor: 11.205

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