Literature DB >> 12167668

The mechanism of type IA topoisomerases.

N H Dekker1, V V Rybenkov, M Duguet, N J Crisona, N R Cozzarelli, D Bensimon, V Croquette.   

Abstract

The topology of cellular DNA is carefully controlled by enzymes called topoisomerases. By using single-molecule techniques, we monitored the activity of two type IA topoisomerases in real time under conditions in which single relaxation events were detected. The strict one-at-a-time removal of supercoils we observed establishes that these enzymes use an enzyme-bridged strand-passage mechanism that is well suited to their physiological roles and demonstrates a mechanistic unity with type II topoisomerases.

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Year:  2002        PMID: 12167668      PMCID: PMC129409          DOI: 10.1073/pnas.132378799

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  25 in total

Review 1.  Twisting and stretching single DNA molecules.

Authors:  T Strick; J Allemand; V Croquette; D Bensimon
Journal:  Prog Biophys Mol Biol       Date:  2000       Impact factor: 3.667

2.  Preferential relaxation of positively supercoiled DNA by E. coli topoisomerase IV in single-molecule and ensemble measurements.

Authors:  N J Crisona; T R Strick; D Bensimon; V Croquette; N R Cozzarelli
Journal:  Genes Dev       Date:  2000-11-15       Impact factor: 11.361

3.  Statistical kinetics of processive enzymes.

Authors:  M J Schnitzer; S M Block
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1995

Review 4.  DNA topoisomerases.

Authors:  J C Wang
Journal:  Annu Rev Biochem       Date:  1996       Impact factor: 23.643

5.  Structural similarities between topoisomerases that cleave one or both DNA strands.

Authors:  J M Berger; D Fass; J C Wang; S C Harrison
Journal:  Proc Natl Acad Sci U S A       Date:  1998-07-07       Impact factor: 11.205

6.  A model for the mechanism of human topoisomerase I.

Authors:  L Stewart; M R Redinbo; X Qiu; W G Hol; J J Champoux
Journal:  Science       Date:  1998-03-06       Impact factor: 47.728

7.  Vaccinia DNA topoisomerase I: evidence supporting a free rotation mechanism for DNA supercoil relaxation.

Authors:  J T Stivers; T K Harris; A S Mildvan
Journal:  Biochemistry       Date:  1997-04-29       Impact factor: 3.162

8.  Single-molecule analysis of DNA uncoiling by a type II topoisomerase.

Authors:  T R Strick; V Croquette; D Bensimon
Journal:  Nature       Date:  2000-04-20       Impact factor: 49.962

9.  Mammalian DNA topoisomerase IIIalpha is essential in early embryogenesis.

Authors:  W Li; J C Wang
Journal:  Proc Natl Acad Sci U S A       Date:  1998-02-03       Impact factor: 11.205

10.  The yeast type I topoisomerase Top3 interacts with Sgs1, a DNA helicase homolog: a potential eukaryotic reverse gyrase.

Authors:  S Gangloff; J P McDonald; C Bendixen; L Arthur; R Rothstein
Journal:  Mol Cell Biol       Date:  1994-12       Impact factor: 4.272

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  49 in total

1.  Type IA DNA topoisomerases: strictly one step at a time.

Authors:  James J Champoux
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-09       Impact factor: 11.205

2.  Single-molecule assay reveals strand switching and enhanced processivity of UvrD.

Authors:  Marie-Noëlle Dessinges; Timothée Lionnet; Xu Guang Xi; David Bensimon; Vincent Croquette
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-12       Impact factor: 11.205

3.  Joining of long double-stranded RNA molecules through controlled overhangs.

Authors:  N H Dekker; J A Abels; P T M Veenhuizen; M M Bruinink; C Dekker
Journal:  Nucleic Acids Res       Date:  2004-10-08       Impact factor: 16.971

4.  Free energy calculations reveal rotating-ratchet mechanism for DNA supercoil relaxation by topoisomerase IB and its inhibition.

Authors:  Jeff Wereszczynski; Ioan Andricioaei
Journal:  Biophys J       Date:  2010-08-04       Impact factor: 4.033

Review 5.  Cellular strategies for regulating DNA supercoiling: a single-molecule perspective.

Authors:  Daniel A Koster; Aurélien Crut; Stewart Shuman; Mary-Ann Bjornsti; Nynke H Dekker
Journal:  Cell       Date:  2010-08-20       Impact factor: 41.582

6.  In memoriam: PNAS Editor-in-Chief Nicholas R. Cozzarelli (1938-2006).

Authors:  Regina Nuzzo; Nick Zagorski
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-04       Impact factor: 11.205

7.  On the topology of chromatin fibres.

Authors:  Maria Barbi; Julien Mozziconacci; Jean-Marc Victor; Hua Wong; Christophe Lavelle
Journal:  Interface Focus       Date:  2012-02-01       Impact factor: 3.906

Review 8.  Single-molecule force spectroscopy: optical tweezers, magnetic tweezers and atomic force microscopy.

Authors:  Keir C Neuman; Attila Nagy
Journal:  Nat Methods       Date:  2008-06       Impact factor: 28.547

9.  Differential and dynamic localization of topoisomerases in Bacillus subtilis.

Authors:  Serkalem Tadesse; Peter L Graumann
Journal:  J Bacteriol       Date:  2006-04       Impact factor: 3.490

10.  The Dynamic Interplay Between DNA Topoisomerases and DNA Topology.

Authors:  Yeonee Seol; Keir C Neuman
Journal:  Biophys Rev       Date:  2016-07-02
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