Literature DB >> 15454415

Transmembrane peptide-induced lipid sorting and mechanism of Lalpha-to-inverted phase transition using coarse-grain molecular dynamics.

Steve O Nielsen1, Carlos F Lopez, Ivaylo Ivanov, Preston B Moore, John C Shelley, Michael L Klein.   

Abstract

Molecular dynamics results are presented for a coarse-grain model of 1,2-di-n-alkanoyl-sn-glycero-3-phosphocholine, water, and a capped cylindrical model of a transmembrane peptide. We first demonstrate that different alkanoyl-length lipids are miscible in the liquid-disordered lamellar (Lalpha) phase. The transmembrane peptide is constructed of hydrophobic sites with hydrophilic caps. The hydrophobic length of the peptide is smaller than the hydrophobic thickness of a bilayer consisting of an equal mixture of long and short alkanoyl tail lipids. When incorporated into the membrane, a meniscus forms in the vicinity of the peptide and the surrounding area is enriched in the short lipid. The meniscus region draws water into it. In the regions that are depleted of water, the bilayers can fuse. The lipid headgroups then rearrange to solvate the newly formed water pores, resulting in an inverted phase. This mechanism appears to be a viable pathway for the experimentally observed Lalpha-to-inverse hexagonal (HII) peptide-induced phase transition. Copyright 2004 Biophysical Society

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Year:  2004        PMID: 15454415      PMCID: PMC1304638          DOI: 10.1529/biophysj.104.040311

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  28 in total

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7.  Theoretical analysis of hydrophobic matching and membrane-mediated interactions in lipid bilayers containing gramicidin.

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Journal:  Biophys J       Date:  1999-06       Impact factor: 4.033

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  22 in total

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4.  Peptide aggregation and pore formation in a lipid bilayer: a combined coarse-grained and all atom molecular dynamics study.

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5.  The multiscale coarse-graining method. IV. Transferring coarse-grained potentials between temperatures.

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6.  Lipid Fluid-Gel Phase Transition Induced Alamethicin Orientational Change Probed by Sum Frequency Generation Vibrational Spectroscopy.

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7.  Structure and dynamics of model pore insertion into a membrane.

Authors:  Carlos F Lopez; Steve O Nielsen; Bernd Ensing; Preston B Moore; Michael L Klein
Journal:  Biophys J       Date:  2005-02-18       Impact factor: 4.033

8.  Coarse-grained molecular dynamics of tetrameric transmembrane peptide bundles within a lipid bilayer.

Authors:  Thuy Hien T Nguyen; Niny Z Rao; William M Schroeder; Preston B Moore
Journal:  Chem Phys Lipids       Date:  2010-04-28       Impact factor: 3.329

9.  Aggregation of model membrane proteins, modulated by hydrophobic mismatch, membrane curvature, and protein class.

Authors:  Daniel L Parton; Jochen W Klingelhoefer; Mark S P Sansom
Journal:  Biophys J       Date:  2011-08-03       Impact factor: 4.033

10.  Insertion and assembly of membrane proteins via simulation.

Authors:  Peter J Bond; Mark S P Sansom
Journal:  J Am Chem Soc       Date:  2006-03-01       Impact factor: 15.419

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