Literature DB >> 18835907

Membrane-protein interactions in a generic coarse-grained model for lipid bilayers.

Beate West1, Frank L H Brown, Friederike Schmid.   

Abstract

We study membrane-protein interactions and membrane-mediated protein-protein interactions by Monte Carlo simulations of a generic coarse-grained model for lipid bilayers with cylindrical hydrophobic inclusions. The strength of the hydrophobic force and the hydrophobic thickness of the proteins are systematically varied. The results are compared with analytical predictions of two popular analytical theories: The Landau-de Gennes theory and the elastic theory. The elastic theory provides an excellent description of the fluctuation spectra of pure membranes and successfully reproduces the deformation profiles of membranes around single proteins. However, its prediction for the potential of mean force between proteins is not compatible with the simulation data for large distances. The simulations show that the lipid-mediated interactions are governed by five competing factors: direct interactions; lipid-induced depletion interactions; lipid bridging; lipid packing; and a smooth long-range contribution. The mechanisms leading to hydrophobic mismatch interactions are critically analyzed.

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Year:  2009        PMID: 18835907      PMCID: PMC2710048          DOI: 10.1529/biophysj.108.138677

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  47 in total

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6.  Energetics of inclusion-induced bilayer deformations.

Authors:  C Nielsen; M Goulian; O S Andersen
Journal:  Biophys J       Date:  1998-04       Impact factor: 4.033

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Journal:  Biophys J       Date:  2006-09-29       Impact factor: 4.033

8.  Theoretical analysis of hydrophobic matching and membrane-mediated interactions in lipid bilayers containing gramicidin.

Authors:  T A Harroun; W T Heller; T M Weiss; L Yang; H W Huang
Journal:  Biophys J       Date:  1999-06       Impact factor: 4.033

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Authors:  O G Mouritsen; M Bloom
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10.  Mattress model of lipid-protein interactions in membranes.

Authors:  O G Mouritsen; M Bloom
Journal:  Biophys J       Date:  1984-08       Impact factor: 4.033

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  25 in total

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7.  Molecular simulation of the effect of cholesterol on lipid-mediated protein-protein interactions.

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Review 9.  Multiscale simulation of protein mediated membrane remodeling.

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Review 10.  Systematic multiscale simulation of membrane protein systems.

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Journal:  Curr Opin Struct Biol       Date:  2009-04-09       Impact factor: 6.809

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