Literature DB >> 12072456

Gene overexpression as a tool for identifying new trans-acting factors involved in translation termination in Saccharomyces cerevisiae.

Olivier Namy1, Isabelle Hatin, Guillaume Stahl, Hongmei Liu, Stephanie Barnay, Laure Bidou, Jean-Pierre Rousset.   

Abstract

In eukaryotes, translation termination is dependent on the availability of both release factors, eRF1 and eRF3; however, the precise mechanisms involved remain poorly understood. In particular, the fact that the phenotype of release factor mutants is pleiotropic could imply that other factors and interactions are involved in translation termination. To identify unknown elements involved in this process, we performed a genetic screen using a reporter strain in which a leaky stop codon is inserted in the lacZ reporter gene, attempting to isolate factors modifying termination efficiency when overexpressed. Twelve suppressors and 11 antisuppressors, increasing or decreasing termination readthrough, respectively, were identified and analyzed for three secondary phenotypes often associated with translation mutations: thermosensitivity, G418 sensitivity, and sensitivity to osmotic pressure. Interestingly, among these candidates, we identified two genes, SSO1 and STU2, involved in protein transport and spindle pole body formation, respectively, suggesting puzzling connections with the translation termination process.

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Year:  2002        PMID: 12072456      PMCID: PMC1462122     

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  45 in total

1.  Enhancement of protein secretion in Saccharomyces cerevisiae by overproduction of Sso protein, a late-acting component of the secretory machinery.

Authors:  L Ruohonen; J Toikkanen; V Tieaho; M Outola; H Soderlund; S Keranen
Journal:  Yeast       Date:  1997-03-30       Impact factor: 3.239

2.  VMA11 and VMA16 encode second and third proteolipid subunits of the Saccharomyces cerevisiae vacuolar membrane H+-ATPase.

Authors:  R Hirata; L A Graham; A Takatsuki; T H Stevens; Y Anraku
Journal:  J Biol Chem       Date:  1997-02-21       Impact factor: 5.157

3.  Variety of nonsense suppressor phenotypes associated with mutational changes at conserved sites in Escherichia coli ribosomal RNA.

Authors:  E J Murgola; F T Pagel; K A Hijazi; A L Arkov; W Xu; S Q Zhao
Journal:  Biochem Cell Biol       Date:  1995 Nov-Dec       Impact factor: 3.626

4.  A set of vectors with a tetracycline-regulatable promoter system for modulated gene expression in Saccharomyces cerevisiae.

Authors:  E Garí; L Piedrafita; M Aldea; E Herrero
Journal:  Yeast       Date:  1997-07       Impact factor: 3.239

Review 5.  Nonsense suppression in mammalian cells.

Authors:  Y Kuchino; T Muramatsu
Journal:  Biochimie       Date:  1996       Impact factor: 4.079

6.  Sensitivity of sup35 and sup45 suppressor mutants in Saccharomyces cerevisiae to the anti-microtubule drug benomyl.

Authors:  V L Tikhomirova; S G Inge-Vechtomov
Journal:  Curr Genet       Date:  1996-06       Impact factor: 3.886

7.  Cloning of the ASN1 and ASN2 genes encoding asparagine synthetases in Saccharomyces cerevisiae: differential regulation by the CCAAT-box-binding factor.

Authors:  V D Dang; M Valens; M Bolotin-Fukuhara; B Daignan-Fornier
Journal:  Mol Microbiol       Date:  1996-11       Impact factor: 3.501

8.  Purification and characterization of the Upf1 protein: a factor involved in translation and mRNA degradation.

Authors:  K Czaplinski; Y Weng; K W Hagan; S W Peltz
Journal:  RNA       Date:  1995-08       Impact factor: 4.942

9.  The products of the SUP45 (eRF1) and SUP35 genes interact to mediate translation termination in Saccharomyces cerevisiae.

Authors:  I Stansfield; K M Jones; V V Kushnirov; A R Dagkesamanskaya; A I Poznyakovski; S V Paushkin; C R Nierras; B S Cox; M D Ter-Avanesyan; M F Tuite
Journal:  EMBO J       Date:  1995-09-01       Impact factor: 11.598

10.  Termination of translation in eukaryotes is governed by two interacting polypeptide chain release factors, eRF1 and eRF3.

Authors:  G Zhouravleva; L Frolova; X Le Goff; R Le Guellec; S Inge-Vechtomov; L Kisselev; M Philippe
Journal:  EMBO J       Date:  1995-08-15       Impact factor: 11.598

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  9 in total

1.  Identification of programmed translational -1 frameshifting sites in the genome of Saccharomyces cerevisiae.

Authors:  Michaël Bekaert; Hugues Richard; Bernard Prum; Jean-Pierre Rousset
Journal:  Genome Res       Date:  2005-10       Impact factor: 9.043

2.  Fine-tuning of translation termination efficiency in Saccharomyces cerevisiae involves two factors in close proximity to the exit tunnel of the ribosome.

Authors:  Isabelle Hatin; Céline Fabret; Olivier Namy; Wayne A Decatur; Jean-Pierre Rousset
Journal:  Genetics       Date:  2007-05-04       Impact factor: 4.562

Review 3.  Modulation of efficiency of translation termination in Saccharomyces cerevisiae.

Authors:  Anton A Nizhnikov; Kirill S Antonets; Sergey G Inge-Vechtomov; Irina L Derkatch
Journal:  Prion       Date:  2014-11-01       Impact factor: 3.931

4.  New insights into stop codon recognition by eRF1.

Authors:  Sandra Blanchet; Michelle Rowe; Tobias Von der Haar; Céline Fabret; Stéphane Demais; Mark J Howard; Olivier Namy
Journal:  Nucleic Acids Res       Date:  2015-03-03       Impact factor: 16.971

5.  Evolutionary Dynamics of Abundant Stop Codon Readthrough.

Authors:  Irwin Jungreis; Clara S Chan; Robert M Waterhouse; Gabriel Fields; Michael F Lin; Manolis Kellis
Journal:  Mol Biol Evol       Date:  2016-09-07       Impact factor: 16.240

6.  Deciphering the reading of the genetic code by near-cognate tRNA.

Authors:  Sandra Blanchet; David Cornu; Isabelle Hatin; Henri Grosjean; Pierre Bertin; Olivier Namy
Journal:  Proc Natl Acad Sci U S A       Date:  2018-03-05       Impact factor: 11.205

7.  Molecular dissection of translation termination mechanism identifies two new critical regions in eRF1.

Authors:  Isabelle Hatin; Celine Fabret; Jean-Pierre Rousset; Olivier Namy
Journal:  Nucleic Acids Res       Date:  2009-01-27       Impact factor: 16.971

8.  Nucleotide modifications in three functionally important regions of the Saccharomyces cerevisiae ribosome affect translation accuracy.

Authors:  Agnès Baudin-Baillieu; Céline Fabret; Xue-Hai Liang; Dorota Piekna-Przybylska; Maurille J Fournier; Jean-Pierre Rousset
Journal:  Nucleic Acids Res       Date:  2009-12       Impact factor: 16.971

9.  New insights into the incorporation of natural suppressor tRNAs at stop codons in Saccharomyces cerevisiae.

Authors:  Sandra Blanchet; David Cornu; Manuela Argentini; Olivier Namy
Journal:  Nucleic Acids Res       Date:  2014-07-23       Impact factor: 16.971

  9 in total

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