Literature DB >> 12060778

An expanded view of bacterial DNA replication.

Marie-Françoise Noirot-Gros1, Etienne Dervyn, Ling Juan Wu, Peggy Mervelet, Jeffery Errington, S Dusko Ehrlich, Philippe Noirot.   

Abstract

A protein-interaction network centered on the replication machinery of Bacillus subtilis was generated by genome-wide two-hybrid screens and systematic specificity assays. The network consists of 91 specific interactions linking 69 proteins. Over one fourth of the interactions take place between homologues of proteins known to interact in other organisms, indicating the high biological significance of the other interactions we report. These interactions provide insights on the relations of DNA replication with recombination and repair, membrane-bound protein complexes, and signaling pathways. They also lead to the biological role of unknown proteins, as illustrated for the highly conserved YabA, which is shown here to act in initiation control. Thus, our interaction map provides a valuable tool for the discovery of aspects of bacterial DNA replication.

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Year:  2002        PMID: 12060778      PMCID: PMC123069          DOI: 10.1073/pnas.122040799

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  48 in total

1.  The beta clamp targets DNA polymerase IV to DNA and strongly increases its processivity.

Authors:  J Wagner; S Fujii; P Gruz; T Nohmi; R P Fuchs
Journal:  EMBO Rep       Date:  2000-12       Impact factor: 8.807

2.  DnaD protein of Bacillus subtilis interacts with DnaA, the initiator protein of replication.

Authors:  D Ishigo-Oka; N Ogasawara; S Moriya
Journal:  J Bacteriol       Date:  2001-03       Impact factor: 3.490

Review 3.  Upheaval in the bacterial nucleoid. An active chromosome segregation mechanism.

Authors:  M E Sharpe; J Errington
Journal:  Trends Genet       Date:  1999-02       Impact factor: 11.639

Review 4.  How signals are heard during bacterial chemotaxis: protein-protein interactions in sensory signal propagation.

Authors:  A Bren; M Eisenbach
Journal:  J Bacteriol       Date:  2000-12       Impact factor: 3.490

Review 5.  Interaction of the beta sliding clamp with MutS, ligase, and DNA polymerase I.

Authors:  F J López de Saro; M O'Donnell
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-17       Impact factor: 11.205

Review 6.  Evolution of a molecular switch: universal bacterial GTPases regulate ribosome function.

Authors:  C E Caldon; P Yoong; P E March
Journal:  Mol Microbiol       Date:  2001-07       Impact factor: 3.501

7.  Two essential DNA polymerases at the bacterial replication fork.

Authors:  E Dervyn; C Suski; R Daniel; C Bruand; J Chapuis; J Errington; L Jannière; S D Ehrlich
Journal:  Science       Date:  2001-11-23       Impact factor: 47.728

8.  Hda, a novel DnaA-related protein, regulates the replication cycle in Escherichia coli.

Authors:  J Kato ; T Katayama
Journal:  EMBO J       Date:  2001-08-01       Impact factor: 11.598

9.  Genetic analysis of the chromosome segregation protein Spo0J of Bacillus subtilis: evidence for separate domains involved in DNA binding and interactions with Soj protein.

Authors:  S Autret; R Nair; J Errington
Journal:  Mol Microbiol       Date:  2001-08       Impact factor: 3.501

10.  A comprehensive two-hybrid analysis to explore the yeast protein interactome.

Authors:  T Ito; T Chiba; R Ozawa; M Yoshida; M Hattori; Y Sakaki
Journal:  Proc Natl Acad Sci U S A       Date:  2001-03-13       Impact factor: 11.205

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  89 in total

Review 1.  Replication-transcription conflicts in bacteria.

Authors:  Houra Merrikh; Yan Zhang; Alan D Grossman; Jue D Wang
Journal:  Nat Rev Microbiol       Date:  2012-06-06       Impact factor: 60.633

2.  Mutations in the Bacillus subtilis beta clamp that separate its roles in DNA replication from mismatch repair.

Authors:  Nicole M Dupes; Brian W Walsh; Andrew D Klocko; Justin S Lenhart; Heather L Peterson; David A Gessert; Cassie E Pavlick; Lyle A Simmons
Journal:  J Bacteriol       Date:  2010-05-07       Impact factor: 3.490

3.  Bacillus subtilis tau subunit of DNA polymerase III interacts with bacteriophage SPP1 replicative DNA helicase G40P.

Authors:  María I Martínez-Jiménez; Pablo Mesa; Juan C Alonso
Journal:  Nucleic Acids Res       Date:  2002-12-01       Impact factor: 16.971

4.  Increasing the ratio of Soj to Spo0J promotes replication initiation in Bacillus subtilis.

Authors:  Yoshitoshi Ogura; Naotake Ogasawara; Elizabeth J Harry; Shigeki Moriya
Journal:  J Bacteriol       Date:  2003-11       Impact factor: 3.490

Review 5.  Diversity in genetic in vivo methods for protein-protein interaction studies: from the yeast two-hybrid system to the mammalian split-luciferase system.

Authors:  Bram Stynen; Hélène Tournu; Jan Tavernier; Patrick Van Dijck
Journal:  Microbiol Mol Biol Rev       Date:  2012-06       Impact factor: 11.056

6.  Primosomal proteins DnaD and DnaB are recruited to chromosomal regions bound by DnaA in Bacillus subtilis.

Authors:  Wiep Klaas Smits; Houra Merrikh; Carla Yaneth Bonilla; Alan D Grossman
Journal:  J Bacteriol       Date:  2010-11-19       Impact factor: 3.490

Review 7.  Bacterial Transcription as a Target for Antibacterial Drug Development.

Authors:  Cong Ma; Xiao Yang; Peter J Lewis
Journal:  Microbiol Mol Biol Rev       Date:  2016-01-13       Impact factor: 11.056

8.  A transcriptional response to replication status mediated by the conserved bacterial replication protein DnaA.

Authors:  Alexi I Goranov; Luba Katz; Adam M Breier; Christopher B Burge; Alan D Grossman
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-24       Impact factor: 11.205

9.  Overexpression of the Hda DnaA-related protein in Escherichia coli inhibits multiplication, affects membrane permeability, and induces the SOS response.

Authors:  Trevor Banack; Natasha Clauson; Nneka Ogbaa; Julian Villar; Donald Oliver; William Firshein
Journal:  J Bacteriol       Date:  2005-12       Impact factor: 3.490

10.  Control of acetyl-coenzyme A synthetase (AcsA) activity by acetylation/deacetylation without NAD(+) involvement in Bacillus subtilis.

Authors:  Jeffrey G Gardner; Frank J Grundy; Tina M Henkin; Jorge C Escalante-Semerena
Journal:  J Bacteriol       Date:  2006-08       Impact factor: 3.490

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