Literature DB >> 12023217

Attenuation of noise in ultrasensitive signaling cascades.

Mukund Thattai1, Alexander van Oudenaarden.   

Abstract

Ultrasensitive cascades often implement thresholding operations in cell signaling and gene regulatory networks, converting graded input signals into discrete all-or-none outputs. However, the biochemical and genetic reactions involved in such cascades are subject to random fluctuations, leading to noise in output signal levels. Here we prove that cascades operating near saturation have output signal fluctuations that are bounded in magnitude, even as the number of noisy cascade stages becomes large. We show that these fluctuation-bounded cascades can be used to attenuate the noise in an input signal, and we find the optimal cascade length required to achieve the best possible noise reduction. Cascades with ultrasensitive transfer functions naturally operate near saturation, and can be made to simultaneously implement thresholding and noise reduction. They are therefore ideally suited to mediate signal transfer in both natural and artificial biological networks.

Mesh:

Year:  2002        PMID: 12023217      PMCID: PMC1302082          DOI: 10.1016/S0006-3495(02)75635-X

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  17 in total

1.  Intrinsic noise in gene regulatory networks.

Authors:  M Thattai; A van Oudenaarden
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-03       Impact factor: 11.205

2.  Ordering genes in a flagella pathway by analysis of expression kinetics from living bacteria.

Authors:  S Kalir; J McClure; K Pabbaraju; C Southward; M Ronen; S Leibler; M G Surette; U Alon
Journal:  Science       Date:  2001-06-15       Impact factor: 47.728

3.  Superiority of interconvertible enzyme cascades in metabolite regulation: analysis of multicyclic systems.

Authors:  P B Chock; E R Stadtman
Journal:  Proc Natl Acad Sci U S A       Date:  1977-07       Impact factor: 11.205

Review 4.  Tripping the switch fantastic: how a protein kinase cascade can convert graded inputs into switch-like outputs.

Authors:  J E Ferrell
Journal:  Trends Biochem Sci       Date:  1996-12       Impact factor: 13.807

5.  Stochastic mechanisms in gene expression.

Authors:  H H McAdams; A Arkin
Journal:  Proc Natl Acad Sci U S A       Date:  1997-02-04       Impact factor: 11.205

6.  Superiority of interconvertible enzyme cascades in metabolic regulation: analysis of monocyclic systems.

Authors:  E R Stadtman; P B Chock
Journal:  Proc Natl Acad Sci U S A       Date:  1977-07       Impact factor: 11.205

7.  The biochemical basis of an all-or-none cell fate switch in Xenopus oocytes.

Authors:  J E Ferrell; E M Machleder
Journal:  Science       Date:  1998-05-08       Impact factor: 47.728

8.  Gain and kinetics of activation in the G-protein cascade of phototransduction.

Authors:  T D Lamb
Journal:  Proc Natl Acad Sci U S A       Date:  1996-01-23       Impact factor: 11.205

9.  An amplified sensitivity arising from covalent modification in biological systems.

Authors:  A Goldbeter; D E Koshland
Journal:  Proc Natl Acad Sci U S A       Date:  1981-11       Impact factor: 11.205

Review 10.  MAP kinase pathways in the yeast Saccharomyces cerevisiae.

Authors:  M C Gustin; J Albertyn; M Alexander; K Davenport
Journal:  Microbiol Mol Biol Rev       Date:  1998-12       Impact factor: 11.056

View more
  76 in total

1.  Bimodal gene expression in noncooperative regulatory systems.

Authors:  Anna Ochab-Marcinek; Marcin Tabaka
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-06       Impact factor: 11.205

2.  Finding undetected protein associations in cell signaling by belief propagation.

Authors:  M Bailly-Bechet; C Borgs; A Braunstein; J Chayes; A Dagkessamanskaia; J-M François; R Zecchina
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-27       Impact factor: 11.205

3.  Defining cooperativity in gene regulation locally through intrinsic noise.

Authors:  M Maienschein-Cline; A Warmflash; A R Dinner
Journal:  IET Syst Biol       Date:  2010-11       Impact factor: 1.615

4.  Stochastic focusing coupled with negative feedback enables robust regulation in biochemical reaction networks.

Authors:  Andreas Milias-Argeitis; Stefan Engblom; Pavol Bauer; Mustafa Khammash
Journal:  J R Soc Interface       Date:  2015-12-06       Impact factor: 4.118

5.  Noisy signal amplification in ultrasensitive signal transduction.

Authors:  Tatsuo Shibata; Koichi Fujimoto
Journal:  Proc Natl Acad Sci U S A       Date:  2004-12-29       Impact factor: 11.205

6.  Ultrasensitivity and noise propagation in a synthetic transcriptional cascade.

Authors:  Sara Hooshangi; Stephan Thiberge; Ron Weiss
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-28       Impact factor: 11.205

7.  An optimal number of molecules for signal amplification and discrimination in a chemical cascade.

Authors:  Yoshihiro Morishita; Tetsuya J Kobayashi; Kazuyuki Aihara
Journal:  Biophys J       Date:  2006-06-23       Impact factor: 4.033

8.  The potential for signal integration and processing in interacting MAP kinase cascades.

Authors:  John H Schwacke; Eberhard O Voit
Journal:  J Theor Biol       Date:  2007-01-14       Impact factor: 2.691

Review 9.  Nature, nurture, or chance: stochastic gene expression and its consequences.

Authors:  Arjun Raj; Alexander van Oudenaarden
Journal:  Cell       Date:  2008-10-17       Impact factor: 41.582

10.  Spectral solutions to stochastic models of gene expression with bursts and regulation.

Authors:  Andrew Mugler; Aleksandra M Walczak; Chris H Wiggins
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2009-10-20
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.