Literature DB >> 12021452

BetaCore, a designed water soluble four-stranded antiparallel beta-sheet protein.

Natàlia Carulla1, Clare Woodward, George Barany.   

Abstract

BetaCore is a designed approximately 50-residue protein in which two BPTI-derived core modules, CM I and CM II, are connected by a 22-atom cross-link. At low temperature and pH 3, homo- and heteronuclear NMR data report a dominant folded ('f') conformation with well-dispersed chemical shifts, i, i+1 periodicity, numerous long-range NOEs, and slowed amide hydrogen isotope exchange patterns that is a four-stranded antiparallel beta-sheet with nonsymmetrical and specific association of CM I and CM II. BetaCore 'f' conformations undergo reversible, global, moderately cooperative, non-two-state thermal transitions to an equilibrium ensemble of unfolded 'u' conformations. There is a significant energy barrier between 'f' and 'u' conformations. This is the first designed four-stranded antiparallel beta-sheet that folds in water.

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Year:  2002        PMID: 12021452      PMCID: PMC2373618          DOI: 10.1110/ps.4440102

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  41 in total

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Authors:  R Li; C Woodward
Journal:  Protein Sci       Date:  1999-08       Impact factor: 6.725

2.  Experimental approaches to protein folding based on the concept of a slow hydrogen exchange core.

Authors:  C Woodward; E Barbar; N Carulla; J Battiste; G Barany
Journal:  J Mol Graph Model       Date:  2001       Impact factor: 2.518

Review 3.  Protein design: on the threshold of functional properties.

Authors:  G Tuchscherer; L Scheibler; P Dumy; M Mutter
Journal:  Biopolymers       Date:  1998       Impact factor: 2.505

4.  Design of a 20-amino acid, three-stranded beta-sheet protein.

Authors:  T Kortemme; M Ramírez-Alvarado; L Serrano
Journal:  Science       Date:  1998-07-10       Impact factor: 47.728

5.  De novo protein design: fully automated sequence selection.

Authors:  B I Dahiyat; S L Mayo
Journal:  Science       Date:  1997-10-03       Impact factor: 47.728

6.  Protein structures in solution by nuclear magnetic resonance and distance geometry. The polypeptide fold of the basic pancreatic trypsin inhibitor determined using two different algorithms, DISGEO and DISMAN.

Authors:  G Wagner; W Braun; T F Havel; T Schaumann; N Go; K Wüthrich
Journal:  J Mol Biol       Date:  1987-08-05       Impact factor: 5.469

7.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

8.  Sequential resonance assignments in protein 1H nuclear magnetic resonance spectra. Basic pancreatic trypsin inhibitor.

Authors:  G Wagner; K Wüthrich
Journal:  J Mol Biol       Date:  1982-03-05       Impact factor: 5.469

9.  A two-dimensional nuclear Overhauser enhancement (2D NOE) experiment for the elucidation of complete proton-proton cross-relaxation networks in biological macromolecules.

Authors:  A Kumar; R R Ernst; K Wüthrich
Journal:  Biochem Biophys Res Commun       Date:  1980-07-16       Impact factor: 3.575

10.  'Random coil' 1H chemical shifts obtained as a function of temperature and trifluoroethanol concentration for the peptide series GGXGG.

Authors:  G Merutka; H J Dyson; P E Wright
Journal:  J Biomol NMR       Date:  1995-01       Impact factor: 2.835

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  5 in total

1.  X-ray structure analysis of a designed oligomeric miniprotein reveals a discrete quaternary architecture.

Authors:  Mayssam H Ali; Ezra Peisach; Karen N Allen; Barbara Imperiali
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-09       Impact factor: 11.205

2.  Characterization of peptide folding nuclei by hydrogen/deuterium exchange-mass spectrometry.

Authors:  Xue Li; Robin J Hood; William J Wedemeyer; J Throck Watson
Journal:  Protein Sci       Date:  2005-07       Impact factor: 6.725

3.  Minimization and optimization of designed beta-hairpin folds.

Authors:  Niels H Andersen; Katherine A Olsen; R Matthew Fesinmeyer; Xu Tan; F Michael Hudson; Lisa A Eidenschink; Shabnam R Farazi
Journal:  J Am Chem Soc       Date:  2006-05-10       Impact factor: 15.419

Review 4.  Artificial beta-sheets: chemical models of beta-sheets.

Authors:  Omid Khakshoor; James S Nowick
Journal:  Curr Opin Chem Biol       Date:  2008-09-05       Impact factor: 8.822

5.  Macrocyclic beta-sheet peptides that mimic protein quaternary structure through intermolecular beta-sheet interactions.

Authors:  Omid Khakshoor; Borries Demeler; James S Nowick
Journal:  J Am Chem Soc       Date:  2007-04-10       Impact factor: 15.419

  5 in total

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