Literature DB >> 23665761

The average shape of the closed trefoil knot fluctuating on a floppy rope.

Marcin Modlinski1, Sylwester Przybyl, Piotr Pieranski.   

Abstract

The average shape of the trefoil knot tied on a floppy, hard rope subject to thermal fluctuations has been determined. The fluctuations of the shape of knots were performed by random bending. As a result of the changing shape procedure large sets of deformed conformations of the initial knot were obtained. Afterwards, these sets were subject to the shape-fitting procedure. It has been found that the conformation is different from the ideal conformation of the knot.

Year:  2013        PMID: 23665761     DOI: 10.1140/epje/i2013-13047-6

Source DB:  PubMed          Journal:  Eur Phys J E Soft Matter        ISSN: 1292-8941            Impact factor:   1.890


  9 in total

1.  Knots and random walks in vibrated granular chains.

Authors:  E Ben-Naim; Z A Daya; P Vorobieff; R E Ecke
Journal:  Phys Rev Lett       Date:  2001-02-19       Impact factor: 9.161

2.  Ideal trefoil knot.

Authors:  P Pieranski; S Przybyl
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2001-08-14

3.  Equilibrium shapes of flat knots.

Authors:  Ralf Metzler; Andreas Hanke; Paul G Dommersnes; Yacov Kantor; Mehran Kardar
Journal:  Phys Rev Lett       Date:  2002-04-19       Impact factor: 9.161

4.  Length of the tightest trefoil knot.

Authors:  Justyna Baranska; Piotr Pieranski; Sylwester Przybyl; Eric J Rawdon
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2004-11-29

5.  The size of knots in polymers.

Authors:  Enzo Orlandini; Attilio L Stella; Carlo Vanderzande
Journal:  Phys Biol       Date:  2009-07-01       Impact factor: 2.583

6.  Symmetry-breaking in cumulative measures of shapes of polymer models.

Authors:  Kenneth C Millett; Eric J Rawdon; T Vy Tran; Andrzej Stasiak
Journal:  J Chem Phys       Date:  2010-10-21       Impact factor: 3.488

7.  Tightness of random knotting.

Authors:  V Katritch; W K Olson; A Vologodskii; J Dubochet; A Stasiak
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  2000-05

8.  Knots in charged polymers.

Authors:  Paul G Dommersnes; Yacov Kantor; Mehran Kardar
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2002-09-19

9.  3D reconstruction and comparison of shapes of DNA minicircles observed by cryo-electron microscopy.

Authors:  Arnaud Amzallag; Cédric Vaillant; Mathews Jacob; Michael Unser; Jan Bednar; Jason D Kahn; Jacques Dubochet; Andrzej Stasiak; John H Maddocks
Journal:  Nucleic Acids Res       Date:  2006-09-29       Impact factor: 16.971

  9 in total

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