Literature DB >> 16109962

Role of disulfide bridges in the activity and stability of a cold-active alpha-amylase.

Khawar Sohail Siddiqui1, Anne Poljak, Michael Guilhaus, Georges Feller, Salvino D'Amico, Charles Gerday, Ricardo Cavicchioli.   

Abstract

The cold-adapted alpha-amylase from Pseudoalteromonas haloplanktis unfolds reversibly and cooperatively according to a two-state mechanism at 30 degrees C and unfolds reversibly and sequentially with two transitions at temperatures below 12 degrees C. To examine the role of the four disulfide bridges in activity and conformational stability of the enzyme, the eight cysteine residues were reduced with beta-mercaptoethanol or chemically modified using iodoacetamide or iodoacetic acid. Matrix-assisted laser desorption-time of flight mass spectrometry analysis confirmed that all of the cysteines were modified. The iodoacetamide-modified enzyme reversibly folded/unfolded and retained approximately one-third of its activity. Removal of all disulfide bonds resulted in stabilization of the least stable region of the enzyme (including the active site), with a concomitant decrease in activity (increase in activation enthalpy). Disulfide bond removal had a greater impact on enzyme activity than on stability (particularly the active-site region). The functional role of the disulfide bridges appears to be to prevent the active site from developing ionic interactions. Overall, the study demonstrated that none of the four disulfide bonds are important in stabilizing the native structure of enzyme, and instead, they appear to promote a localized destabilization to preserve activity.

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Year:  2005        PMID: 16109962      PMCID: PMC1196145          DOI: 10.1128/JB.187.17.6206-6212.2005

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  29 in total

1.  Structural determinants of cold adaptation and stability in a large protein.

Authors:  S D'Amico; C Gerday; G Feller
Journal:  J Biol Chem       Date:  2001-04-26       Impact factor: 5.157

2.  Maximal stabilities of reversible two-state proteins.

Authors:  Sandeep Kumar; Chung-Jung Tsai; Ruth Nussinov
Journal:  Biochemistry       Date:  2002-04-30       Impact factor: 3.162

Review 3.  Low-temperature extremophiles and their applications.

Authors:  Ricardo Cavicchioli; Khawar S Siddiqui; David Andrews; Kevin R Sowers
Journal:  Curr Opin Biotechnol       Date:  2002-06       Impact factor: 9.740

Review 4.  Some like it cold: biocatalysis at low temperatures.

Authors:  D Georlette; V Blaise; T Collins; S D'Amico; E Gratia; A Hoyoux; J-C Marx; G Sonan; G Feller; C Gerday
Journal:  FEMS Microbiol Rev       Date:  2004-02       Impact factor: 16.408

5.  Crystal structures of the psychrophilic alpha-amylase from Alteromonas haloplanctis in its native form and complexed with an inhibitor.

Authors:  N Aghajari; G Feller; C Gerday; R Haser
Journal:  Protein Sci       Date:  1998-03       Impact factor: 6.725

6.  Structural similarities and evolutionary relationships in chloride-dependent alpha-amylases.

Authors:  S D'Amico; C Gerday; G Feller
Journal:  Gene       Date:  2000-07-25       Impact factor: 3.688

7.  Horizontal gene transfer from Eukarya to bacteria and domain shuffling: the alpha-amylase model.

Authors:  J-L Da Lage; G Feller; S Janecek
Journal:  Cell Mol Life Sci       Date:  2004-01       Impact factor: 9.261

8.  Conformational stability and activity of ribonuclease T1 with zero, one, and two intact disulfide bonds.

Authors:  C N Pace; G R Grimsley; J A Thomson; B J Barnett
Journal:  J Biol Chem       Date:  1988-08-25       Impact factor: 5.157

9.  Structural and functional roles of cysteine residues of Bacillus polymyxa beta-amylase.

Authors:  N Uozumi; T Matsuda; N Tsukagoshi; S Udaka
Journal:  Biochemistry       Date:  1991-05-07       Impact factor: 3.162

10.  Mechanism of protein stabilization by disulfide bridges: calorimetric unfolding studies on disulfide-deficient mutants of the alpha-amylase inhibitor tendamistat.

Authors:  T Vogl; R Brengelmann; H J Hinz; M Scharf; M Lötzbeyer; J W Engels
Journal:  J Mol Biol       Date:  1995-12-01       Impact factor: 5.469

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  9 in total

1.  Application of molecular dynamics simulations to design a dual-purpose oligopeptide linker sequence for fusion proteins.

Authors:  Ehsan Rezaie; Mozafar Mohammadi; Amirhossein Sakhteman; Peyman Bemani; Sajjad Ahrari
Journal:  J Mol Model       Date:  2018-10-15       Impact factor: 1.810

Review 2.  Structural and functional adaptation in extremophilic microbial α-amylases.

Authors:  Aziz Ahmad; Rajesh Mishra
Journal:  Biophys Rev       Date:  2022-01-24

3.  Intrinsic halotolerance of the psychrophilic alpha-amylase from Pseudoalteromonas haloplanktis.

Authors:  Soundararajan Srimathi; Gurunathan Jayaraman; Georges Feller; Bengt Danielsson; Paranji R Narayanan
Journal:  Extremophiles       Date:  2007-02-20       Impact factor: 3.035

4.  Function and biotechnology of extremophilic enzymes in low water activity.

Authors:  Ram Karan; Melinda D Capes; Shiladitya Dassarma
Journal:  Aquat Biosyst       Date:  2012-02-02

5.  Formation and reshuffling of disulfide bonds in bovine serum albumin demonstrated using tandem mass spectrometry with collision-induced and electron-transfer dissociation.

Authors:  Ine Rombouts; Bert Lagrain; Katharina A Scherf; Marlies A Lambrecht; Peter Koehler; Jan A Delcour
Journal:  Sci Rep       Date:  2015-07-20       Impact factor: 4.379

6.  Crystal structure of a raw-starch-degrading bacterial α-amylase belonging to subfamily 37 of the glycoside hydrolase family GH13.

Authors:  Yanhong Liu; Jigang Yu; Fudong Li; Hui Peng; Xuecheng Zhang; Yazhong Xiao; Chao He
Journal:  Sci Rep       Date:  2017-03-17       Impact factor: 4.379

7.  Prediction of reversible disulfide based on features from local structural signatures.

Authors:  Ming-An Sun; Yejun Wang; Qing Zhang; Yiji Xia; Wei Ge; Dianjing Guo
Journal:  BMC Genomics       Date:  2017-04-04       Impact factor: 3.969

8.  Multi-state proteins: approach allowing experimental determination of the formation order of structure elements in the green fluorescent protein.

Authors:  Tatiana N Melnik; Tatiana V Povarnitsyna; Anatoly S Glukhov; Bogdan S Melnik
Journal:  PLoS One       Date:  2012-11-14       Impact factor: 3.240

Review 9.  Psychrophilic enzymes: from folding to function and biotechnology.

Authors:  Georges Feller
Journal:  Scientifica (Cairo)       Date:  2013-01-17
  9 in total

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