Literature DB >> 11955179

Synthetic gene network for entraining and amplifying cellular oscillations.

Jeff Hasty1, Milos Dolnik, Vivi Rottschäfer, James J Collins.   

Abstract

We present a model for a synthetic gene oscillator and consider the coupling of the oscillator to a periodic process that is intrinsic to the cell. We investigate the synchronization properties of the coupled system, and show how the oscillator can be constructed to yield a significant amplification of cellular oscillations. We reduce the driven oscillator equations to a normal form, and analytically determine the amplification as a function of the strength of the cellular oscillations. The ability to couple naturally occurring genetic oscillations to a synthetically designed network could lead to possible strategies for entraining and/or amplifying oscillations in cellular protein levels.

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Year:  2002        PMID: 11955179     DOI: 10.1103/PhysRevLett.88.148101

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  60 in total

1.  Optimizing genetic circuits by global sensitivity analysis.

Authors:  Xiao-Jiang Feng; Sara Hooshangi; David Chen; Genyuan Li; Ron Weiss; Herschel Rabitz
Journal:  Biophys J       Date:  2004-10       Impact factor: 4.033

2.  Synthesis of robust tunable oscillators using mitogen activated protein kinase cascades.

Authors:  Vishwesh V Kulkarni; Aditya Paranjape; Khem Raj Ghusinga; Naira Hovakimyan
Journal:  Syst Synth Biol       Date:  2011-03-06

3.  Architecture-dependent robustness and bistability in a class of genetic circuits.

Authors:  Jiajun Zhang; Zhanjiang Yuan; Han-Xiong Li; Tianshou Zhou
Journal:  Biophys J       Date:  2010-08-09       Impact factor: 4.033

Review 4.  A comparative analysis of synthetic genetic oscillators.

Authors:  Oliver Purcell; Nigel J Savery; Claire S Grierson; Mario di Bernardo
Journal:  J R Soc Interface       Date:  2010-06-30       Impact factor: 4.118

5.  Maximum Caliber Can Build and Infer Models of Oscillation in a Three-Gene Feedback Network.

Authors:  Taylor Firman; Anar Amgalan; Kingshuk Ghosh
Journal:  J Phys Chem B       Date:  2019-01-09       Impact factor: 2.991

Review 6.  Genetic design automation: engineering fantasy or scientific renewal?

Authors:  Matthew W Lux; Brian W Bramlett; David A Ball; Jean Peccoud
Journal:  Trends Biotechnol       Date:  2011-10-14       Impact factor: 19.536

7.  Noisy signal amplification in ultrasensitive signal transduction.

Authors:  Tatsuo Shibata; Koichi Fujimoto
Journal:  Proc Natl Acad Sci U S A       Date:  2004-12-29       Impact factor: 11.205

8.  Model-driven designs of an oscillating gene network.

Authors:  Lisa M Tuttle; Howard Salis; Jonathan Tomshine; Yiannis N Kaznessis
Journal:  Biophys J       Date:  2005-09-23       Impact factor: 4.033

9.  The use of oscillatory signals in the study of genetic networks.

Authors:  Ovidiu Lipan; Wing H Wong
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-09       Impact factor: 11.205

Review 10.  The pedestrian watchmaker: genetic clocks from engineered oscillators.

Authors:  Natalie A Cookson; Lev S Tsimring; Jeff Hasty
Journal:  FEBS Lett       Date:  2009-12-17       Impact factor: 4.124

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