Literature DB >> 11955052

Understanding nature's strategies for enzyme-catalyzed racemization and epimerization.

Martin E Tanner1.   

Abstract

Epimerases and racemases are enzymes that catalyze the inversion of stereochemistry in biological molecules. In this article, three distinct examples are used to illustrate the wide range of chemical strategies employed during catalysis, and the diverse set of ancestors from which these enzymes have evolved. Glutamate racemase is an example of an enzyme that operates at an "activated" stereocenter (bearing a relatively acidic proton) and employs a nonstereospecific deprotonation/reprotonation mechanism. UDP-N-Acetylglucosamine 2-epimerase acts at an "unactivated" stereocenter and uses a mechanism involving a nonstereospecific elimination/addition of UDP. L-Ribulose phosphate 4-epimerase also acts at an unactivated stereocenter and uses a nonstereospecific retroaldol/aldol mechanism.

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Year:  2002        PMID: 11955052     DOI: 10.1021/ar000056y

Source DB:  PubMed          Journal:  Acc Chem Res        ISSN: 0001-4842            Impact factor:   22.384


  27 in total

1.  Exploring the chemistry and evolution of the isomerases.

Authors:  Sergio Martínez Cuesta; Syed Asad Rahman; Janet M Thornton
Journal:  Proc Natl Acad Sci U S A       Date:  2016-02-03       Impact factor: 11.205

2.  Crystal structure, catalytic mechanism, and mitogenic properties of Trypanosoma cruzi proline racemase.

Authors:  Alejandro Buschiazzo; Maira Goytia; Francis Schaeffer; Wim Degrave; William Shepard; Christophe Grégoire; Nathalie Chamond; Alain Cosson; Armand Berneman; Nicolas Coatnoan; Pedro M Alzari; Paola Minoprio
Journal:  Proc Natl Acad Sci U S A       Date:  2006-01-30       Impact factor: 11.205

3.  Crystallization and preliminary X-ray diffraction experiments of arylmalonate decarboxylase from Alcaligenes bronchisepticus.

Authors:  Masayoshi Nakasako; Rika Obata; Ryosuke Okubo; Shyuichi Nakayama; Kenji Miyamoto; Hiromichi Ohta
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-06-11

Review 4.  Nonproteinogenic amino acid building blocks for nonribosomal peptide and hybrid polyketide scaffolds.

Authors:  Christopher T Walsh; Robert V O'Brien; Chaitan Khosla
Journal:  Angew Chem Int Ed Engl       Date:  2013-05-31       Impact factor: 15.336

5.  Discovery of Novel Putative Inhibitors of UDP-GlcNAc 2-Epimerase as Potent Antibacterial Agents.

Authors:  Yong Xu; Benjamin Brenning; Adrianne Clifford; David Vollmer; Jared Bearss; Carissa Jones; Virgil McCarthy; Chongtie Shi; Bradley Wolfe; Bhasker Aavula; Steve Warner; David J Bearss; Michael V McCullar; Raymond Schuch; Adam Pelzek; Shyam S Bhaskaran; C Erec Stebbins; Allan R Goldberg; Vincent A Fischetti; Hariprasad Vankayalapati
Journal:  ACS Med Chem Lett       Date:  2013-12-12       Impact factor: 4.345

6.  Complete Stereoinversion of l-Tryptophan by a Fungal Single-Module Nonribosomal Peptide Synthetase.

Authors:  Yang Hai; Matthew Jenner; Yi Tang
Journal:  J Am Chem Soc       Date:  2019-10-03       Impact factor: 15.419

7.  Structural characterization of a nonhydrolyzing UDP-GlcNAc 2-epimerase from Neisseria meningitidis serogroup A.

Authors:  Nicholas K Hurlburt; Jasper Guan; Hoonsan Ong; Hai Yu; Xi Chen; Andrew J Fisher
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2020-10-29       Impact factor: 1.056

8.  Engineering Fluorine into Verticillins (Epipolythiodioxopiperazine Alkaloids) via Precursor-Directed Biosynthesis.

Authors:  Chiraz Soumia M Amrine; Jessica L Long; Huzefa A Raja; Steven J Kurina; Joanna E Burdette; Cedric J Pearce; Nicholas H Oberlies
Journal:  J Nat Prod       Date:  2019-10-21       Impact factor: 4.050

9.  Behavioural and genetic analyses of Nasonia shed light on the evolution of sex pheromones.

Authors:  Oliver Niehuis; Jan Buellesbach; Joshua D Gibson; Daniela Pothmann; Christian Hanner; Navdeep S Mutti; Andrea K Judson; Jürgen Gadau; Joachim Ruther; Thomas Schmitt
Journal:  Nature       Date:  2013-02-13       Impact factor: 49.962

10.  Crystallization and preliminary X-ray crystallographic studies of glutamate racemase from Lactobacillus fermenti.

Authors:  Ki-Seog Lee; Seon-Mi Park; Kwang Yeon Hwang; Young-Min Chi
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-01-20
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