Literature DB >> 16510993

Crystallization and preliminary X-ray crystallographic studies of glutamate racemase from Lactobacillus fermenti.

Ki-Seog Lee1, Seon-Mi Park, Kwang Yeon Hwang, Young-Min Chi.   

Abstract

Glutamate racemase catalyzes the conversion of L-glutamic acid to D-glutamic acid and vice versa. Since D-glutamic acid is one of the essential amino acids present in peptidoglycan, glutamate racemase has been considered to be an attractive target for the design of new antibacterial drugs. Glutamate racemase from Lactobacillus fermenti has been crystallized by the hanging-drop vapour-diffusion method using polyethylene glycol 8000 as a precipitant. The crystals belong to the orthorhombic space group C222(1), with unit-cell parameters a = 98.32, b = 184.09, c = 45.99 A. The asymmetric unit contains one molecule, corresponding to a VM value of 1.84 A3 Da(-1). A complete data set has been collected from the native enzyme at 2.28 A resolution using a synchrotron-radiation source.

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Year:  2005        PMID: 16510993      PMCID: PMC1952270          DOI: 10.1107/S1744309104034426

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  14 in total

Review 1.  Understanding nature's strategies for enzyme-catalyzed racemization and epimerization.

Authors:  Martin E Tanner
Journal:  Acc Chem Res       Date:  2002-04       Impact factor: 22.384

2.  Properties of aspartate racemase, a pyridoxal 5'-phosphate-independent amino acid racemase.

Authors:  T Yamauchi; S Y Choi; H Okada; M Yohda; H Kumagai; N Esaki; K Soda
Journal:  J Biol Chem       Date:  1992-09-15       Impact factor: 5.157

Review 3.  Enzymes in the D-alanine branch of bacterial cell wall peptidoglycan assembly.

Authors:  C T Walsh
Journal:  J Biol Chem       Date:  1989-02-15       Impact factor: 5.157

4.  Processing of X-ray diffraction data collected in oscillation mode.

Authors:  Z Otwinowski; W Minor
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

5.  Active site residues of glutamate racemase.

Authors:  S Glavas; M E Tanner
Journal:  Biochemistry       Date:  2001-05-29       Impact factor: 3.162

6.  Structure and mechanism of glutamate racemase from Aquifex pyrophilus.

Authors:  K Y Hwang; C S Cho; S S Kim; H C Sung; Y G Yu; Y Cho
Journal:  Nat Struct Biol       Date:  1999-05

7.  Chemical mechanism of Haemophilus influenzae diaminopimelate epimerase.

Authors:  C W Koo; J S Blanchard
Journal:  Biochemistry       Date:  1999-04-06       Impact factor: 3.162

8.  Catalytic acid/base residues of glutamate racemase.

Authors:  S Glavas; M E Tanner
Journal:  Biochemistry       Date:  1999-03-30       Impact factor: 3.162

9.  Crystal structure of aspartate racemase from Pyrococcus horikoshii OT3 and its implications for molecular mechanism of PLP-independent racemization.

Authors:  Lijun Liu; Kousuke Iwata; Akiko Kita; Yutaka Kawarabayasi; Masafumi Yohda; Kunio Miki
Journal:  J Mol Biol       Date:  2002-05-31       Impact factor: 5.469

10.  Selenomethionyl proteins produced for analysis by multiwavelength anomalous diffraction (MAD): a vehicle for direct determination of three-dimensional structure.

Authors:  W A Hendrickson; J R Horton; D M LeMaster
Journal:  EMBO J       Date:  1990-05       Impact factor: 11.598

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