Literature DB >> 11916740

Propionate formation by Opitutus terrae in pure culture and in mixed culture with a hydrogenotrophic methanogen and implications for carbon fluxes in anoxic rice paddy soil.

Kuk-Jeong Chin1, Peter H Janssen.   

Abstract

Propionate-forming bacteria seem to be abundant in anoxic rice paddy soil, but biogeochemical investigations show that propionate is not a correspondingly important intermediate in carbon flux in this system. Mixed cultures of Opitutus terrae strain PB90-1, a representative propionate-producing bacterium from rice paddy soil, and the hydrogenotrophic Methanospirillum hungatei strain SK maintained hydrogen partial pressures similar to those in the soil. The associated shift away from propionate formation observed in these cultures helps to reconcile the disparity between microbiological and biogeochemical studies.

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Year:  2002        PMID: 11916740      PMCID: PMC123890          DOI: 10.1128/AEM.68.4.2089-2092.2002

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  16 in total

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Authors:  D Rosencrantz; F A Rainey; P H Janssen
Journal:  Appl Environ Microbiol       Date:  1999-08       Impact factor: 4.792

2.  Comparative phylogenetic assignment of environmental sequences of genes encoding 16S rRNA and numerically abundant culturable bacteria from an anoxic rice paddy soil.

Authors:  U Hengstmann; K J Chin; P H Janssen; W Liesack
Journal:  Appl Environ Microbiol       Date:  1999-11       Impact factor: 4.792

3.  Estimation of standard Gibbs energy changes of biotransformations.

Authors:  M L Mavrovouniotis
Journal:  J Biol Chem       Date:  1991-08-05       Impact factor: 5.157

4.  Microbiology of wetwood: importance of pectin degradation and clostridium species in living trees.

Authors:  B Schink; J C Ward; J G Zeikus
Journal:  Appl Environ Microbiol       Date:  1981-09       Impact factor: 4.792

5.  Energy conservation in chemotrophic anaerobic bacteria.

Authors:  R K Thauer; K Jungermann; K Decker
Journal:  Bacteriol Rev       Date:  1977-03

6.  Bacterial populations colonizing and degrading rice straw in anoxic paddy soil.

Authors:  S Weber; S Stubner; R Conrad
Journal:  Appl Environ Microbiol       Date:  2001-03       Impact factor: 4.792

7.  Opitutus terrae gen. nov., sp. nov., to accommodate novel strains of the division 'Verrucomicrobia' isolated from rice paddy soil.

Authors:  K J Chin; W Liesack; P H Janssen
Journal:  Int J Syst Evol Microbiol       Date:  2001-11       Impact factor: 2.747

8.  H2 production by Selenomonas ruminantium in the absence and presence of methanogenic bacteria.

Authors:  C C Scheifinger; B Linehan; M J Wolin
Journal:  Appl Microbiol       Date:  1975-04

9.  Glucose fermentation products in Ruminococcus albus grown in continuous culture with Vibrio succinogenes: changes caused by interspecies transfer of H 2 .

Authors:  E L Iannotti; D Kafkewitz; M J Wolin; M P Bryant
Journal:  J Bacteriol       Date:  1973-06       Impact factor: 3.490

10.  Fermentation of cellulose by Ruminococcus flavefaciens in the presence and absence of Methanobacterium ruminantium.

Authors:  M J Latham; M J Wolin
Journal:  Appl Environ Microbiol       Date:  1977-09       Impact factor: 4.792

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  9 in total

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2.  Genome sequence of the verrucomicrobium Opitutus terrae PB90-1, an abundant inhabitant of rice paddy soil ecosystems.

Authors:  Mark W J van Passel; Ravi Kant; Airi Palva; Alex Copeland; Susan Lucas; Alla Lapidus; Tijana Glavina del Rio; Sam Pitluck; Eugene Goltsman; Alicia Clum; Hui Sun; Jeremy Schmutz; Frank W Larimer; Miriam L Land; Loren Hauser; Nikolaos Kyrpides; Natalia Mikhailova; P Paul Richardson; Peter H Janssen; Willem M de Vos; Hauke Smidt
Journal:  J Bacteriol       Date:  2011-03-11       Impact factor: 3.490

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4.  Surveying the microbiome of ants: comparing 454 pyrosequencing with traditional methods to uncover bacterial diversity.

Authors:  Stefanie Kautz; Benjamin E R Rubin; Jacob A Russell; Corrie S Moreau
Journal:  Appl Environ Microbiol       Date:  2012-11-02       Impact factor: 4.792

5.  Bacterial community composition of size-fractioned aggregates within the phycosphere of cyanobacterial blooms in a eutrophic freshwater lake.

Authors:  Haiyuan Cai; Helong Jiang; Lee R Krumholz; Zhen Yang
Journal:  PLoS One       Date:  2014-08-21       Impact factor: 3.240

6.  Elevated Air Humidity Changes Soil Bacterial Community Structure in the Silver Birch Stand.

Authors:  Marika Truu; Ivika Ostonen; Jens-Konrad Preem; Krista Lõhmus; Hiie Nõlvak; Teele Ligi; Katrin Rosenvald; Kaarin Parts; Priit Kupper; Jaak Truu
Journal:  Front Microbiol       Date:  2017-04-03       Impact factor: 5.640

7.  Microbial Biomarker Transition in High-Altitude Sinter Mounds From El Tatio (Chile) Through Different Stages of Hydrothermal Activity.

Authors:  Laura Sanchez-Garcia; Miguel Angel Fernandez-Martinez; Miriam García-Villadangos; Yolanda Blanco; Sherry L Cady; Nancy Hinman; Mark E Bowden; Stephen B Pointing; Kevin C Lee; Kimberly Warren-Rhodes; Donnabella Lacap-Bugler; Nathalie A Cabrol; Victor Parro; Daniel Carrizo
Journal:  Front Microbiol       Date:  2019-01-15       Impact factor: 5.640

Review 8.  Microbial Community Composition of the Antarctic Ecosystems: Review of the Bacteria, Fungi, and Archaea Identified through an NGS-Based Metagenomics Approach.

Authors:  Vesselin V Doytchinov; Svetoslav G Dimov
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9.  Soil bacterial communities shaped by geochemical factors and land use in a less-explored area, Tibetan Plateau.

Authors:  Xiangyu Guan; Jinfeng Wang; Hui Zhao; Jianjun Wang; Ximing Luo; Fei Liu; Fangqing Zhao
Journal:  BMC Genomics       Date:  2013-11-22       Impact factor: 3.969

  9 in total

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