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Literature DB >> 1860851

Estimation of standard Gibbs energy changes of biotransformations.

Abstract

Contributions and corrections for the estimation of standard Gibbs energies are given. The group contribution method, applicable to both cyclic and acyclic compounds, permits the approximate estimation of the standard Gibbs energy of a biotransformation, given the stoichiometry and structures of the metabolites involved. Estimated standard Gibbs energies of formation for a number of acyclic biochemical compounds are provided.

Mesh：

Year: 1991 PMID： 1860851

Source DB: PubMed Journal: J Biol Chem ISSN： 0021-9258 Impact factor: 5.157

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Cited

58 in total

1. Chemical constraints governing the origin of metabolism: the thermodynamic landscape of carbon group transformations under mild aqueous conditions.

Authors: Arthur L Weber
Journal: Orig Life Evol Biosph Date: 2002-08 Impact factor: 1.950

2. Sugars as the optimal biosynthetic carbon substrate of aqueous life throughout the universe.

Authors: A L Weber
Journal: Orig Life Evol Biosph Date: 2000-02 Impact factor: 1.950

3. IGERS: inferring Gibbs energy changes of biochemical reactions from reaction similarities.

Authors: Kristian Rother; Sabrina Hoffmann; Sascha Bulik; Andreas Hoppe; Johann Gasteiger; Herrmann-Georg Holzhütter
Journal: Biophys J Date: 2010-06-02 Impact factor: 4.033

4. Revisiting the thermodynamic theory of optimal ATP stoichiometries by analysis of various ATP-producing metabolic pathways.

Authors: Sarah Werner; Gabriele Diekert; Stefan Schuster
Journal: J Mol Evol Date: 2010-10-05 Impact factor: 2.395

5. Substructural fragments: an universal language to encode reactions, molecular and supramolecular structures.

Authors: A Varnek; D Fourches; F Hoonakker; V P Solov'ev
Journal: J Comput Aided Mol Des Date: 2005-11-16 Impact factor: 3.686

6. The sugar model: catalytic flow reactor dynamics of pyruvaldehyde synthesis from triose catalyzed by poly-l-lysine contained in a dialyzer.

Authors: A L Weber
Journal: Orig Life Evol Biosph Date: 2001-06 Impact factor: 1.950

Estimation of standard Gibbs energy changes of biotransformations.

1. Chemical constraints governing the origin of metabolism: the thermodynamic landscape of carbon group transformations under mild aqueous conditions.

2. Sugars as the optimal biosynthetic carbon substrate of aqueous life throughout the universe.

3. IGERS: inferring Gibbs energy changes of biochemical reactions from reaction similarities.

4. Revisiting the thermodynamic theory of optimal ATP stoichiometries by analysis of various ATP-producing metabolic pathways.

5. Substructural fragments: an universal language to encode reactions, molecular and supramolecular structures.

6. The sugar model: catalytic flow reactor dynamics of pyruvaldehyde synthesis from triose catalyzed by poly-l-lysine contained in a dialyzer.

7. Group contribution method for thermodynamic analysis of complex metabolic networks.

8. Quantitative assessment of thermodynamic constraints on the solution space of genome-scale metabolic models.

9. Thermodynamics-based metabolic flux analysis.

Review 10. Problems with the microbial production of butanol.