Literature DB >> 11760935

Opitutus terrae gen. nov., sp. nov., to accommodate novel strains of the division 'Verrucomicrobia' isolated from rice paddy soil.

K J Chin, W Liesack, P H Janssen.   

Abstract

Three strains of obligately anaerobic bacteria were isolated from rice paddy soil microcosms. Comparative analysis of the 16S rRNA genes showed that these novel isolates have identical gene sequences and are members of the division 'Verrucomicrobia'. The novel strains are phenotypically and phylogenetically distinct from species described previously. One strain, PB90-1T, was characterized in more detail. The cells are cocci and are motile by means of a flagellum. Catalase and oxidase activities are absent. Growth-supporting substrates include mono-, di- and polysaccharides, while alcohols, amino acids and organic acids do not support growth. Propionate and acetate are the major end-products of fermentation. Nitrate is reduced to nitrite, but other external electron acceptors are not utilized. The G+C content of the genomic DNA is 74 mol%. This strain represents a taxon that has not yet been formally recognized, for which the name Opitutus terrae gen. nov., sp. nov. is proposed. The type strain is PB90-1T (= DSM 11246T).

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Year:  2001        PMID: 11760935     DOI: 10.1099/00207713-51-6-1965

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  48 in total

1.  Denitrifying bacteria isolated from terrestrial subsurface sediments exposed to mixed-waste contamination.

Authors:  Stefan J Green; Om Prakash; Thomas M Gihring; Denise M Akob; Puja Jasrotia; Philip M Jardine; David B Watson; Steven D Brown; Anthony V Palumbo; Joel E Kostka
Journal:  Appl Environ Microbiol       Date:  2010-03-19       Impact factor: 4.792

2.  Detection and cultivation of soil verrucomicrobia.

Authors:  Parveen Sangwan; Suzana Kovac; Kathryn E R Davis; Michelle Sait; Peter H Janssen
Journal:  Appl Environ Microbiol       Date:  2005-12       Impact factor: 4.792

3.  Phylogenetic analysis and in situ identification of bacteria community composition in an acidic Sphagnum peat bog.

Authors:  Svetlana N Dedysh; Timofei A Pankratov; Svetlana E Belova; Irina S Kulichevskaya; Werner Liesack
Journal:  Appl Environ Microbiol       Date:  2006-03       Impact factor: 4.792

4.  Organic Soils Control Beetle Survival While Competitors Limit Aphid Population Growth.

Authors:  Karol L Krey; Carmen K Blubaugh; James T Van Leuven; William E Snyder
Journal:  Environ Entomol       Date:  2019-12-02       Impact factor: 2.377

5.  Genome sequence of the verrucomicrobium Opitutus terrae PB90-1, an abundant inhabitant of rice paddy soil ecosystems.

Authors:  Mark W J van Passel; Ravi Kant; Airi Palva; Alex Copeland; Susan Lucas; Alla Lapidus; Tijana Glavina del Rio; Sam Pitluck; Eugene Goltsman; Alicia Clum; Hui Sun; Jeremy Schmutz; Frank W Larimer; Miriam L Land; Loren Hauser; Nikolaos Kyrpides; Natalia Mikhailova; P Paul Richardson; Peter H Janssen; Willem M de Vos; Hauke Smidt
Journal:  J Bacteriol       Date:  2011-03-11       Impact factor: 3.490

6.  Large fractions of CO2-fixing microorganisms in pristine limestone aquifers appear to be involved in the oxidation of reduced sulfur and nitrogen compounds.

Authors:  Martina Herrmann; Anna Rusznyák; Denise M Akob; Isabel Schulze; Sebastian Opitz; Kai Uwe Totsche; Kirsten Küsel
Journal:  Appl Environ Microbiol       Date:  2015-01-23       Impact factor: 4.792

7.  Propionate formation by Opitutus terrae in pure culture and in mixed culture with a hydrogenotrophic methanogen and implications for carbon fluxes in anoxic rice paddy soil.

Authors:  Kuk-Jeong Chin; Peter H Janssen
Journal:  Appl Environ Microbiol       Date:  2002-04       Impact factor: 4.792

8.  Diversity and Cyclical Seasonal Transitions in the Bacterial Community in a Large and Deep Perialpine Lake.

Authors:  Nico Salmaso; Davide Albanese; Camilla Capelli; Adriano Boscaini; Massimo Pindo; Claudio Donati
Journal:  Microb Ecol       Date:  2017-12-01       Impact factor: 4.552

9.  Ecophysiological interaction between nitrifying bacteria and heterotrophic bacteria in autotrophic nitrifying biofilms as determined by microautoradiography-fluorescence in situ hybridization.

Authors:  Tomonori Kindaichi; Tsukasa Ito; Satoshi Okabe
Journal:  Appl Environ Microbiol       Date:  2004-03       Impact factor: 4.792

10.  Bacterial population structure of the jute-retting environment.

Authors:  Tulika K Munshi; Bharat B Chattoo
Journal:  Microb Ecol       Date:  2007-12-21       Impact factor: 4.552

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