Literature DB >> 16331421

Determination of 13C CSA tensors: extension of the model-independent approach to an RNA kissing complex undergoing anisotropic rotational diffusion in solution.

Sapna Ravindranathan1, Chul-Hyun Kim, Geoffrey Bodenhausen.   

Abstract

Chemical shift anisotropy (CSA) tensor parameters have been determined for the protonated carbons of the purine bases in an RNA kissing complex in solution by extending the model-independent approach [Fushman, D., Cowburn, D. (1998) J. Am. Chem. Soc. 120, 7109-7110]. A strategy for determining CSA tensor parameters of heteronuclei in isolated X-H two-spin systems (X = 13C or 15N) in molecules undergoing anisotropic rotational diffusion is presented. The original method relies on the fact that the ratio kappa2=R2 auto/R2 cross of the transverse auto- and cross-correlated relaxation rates involving the X CSA and the X-H dipolar interaction is independent of parameters related to molecular motion, provided rotational diffusion is isotropic. However, if the overall motion is anisotropic kappa2 depends on the anisotropy D(parallel)/D (perpendicular) of rotational diffusion. In this paper, the field dependence of both kappa2 and its longitudinal counterpart kappa1=R1 auto/R1 cross are determined. For anisotropic rotational diffusion, our calculations show that the average kappa(av) = 1/2 (kappa1+kappa2), of the ratios is largely independent of the anisotropy parameter D(parallel)/D (perpendicular). The field dependence of the average ratio kappa(av) may thus be utilized to determine CSA tensor parameters by a generalized model-independent approach in the case of molecules with an overall motion described by an axially symmetric rotational diffusion tensor.

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Year:  2005        PMID: 16331421     DOI: 10.1007/s10858-005-3472-7

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  15 in total

1.  Determination of chemical shift anisotropy tensors of carbonyl nuclei in proteins through cross-correlated relaxation in NMR.

Authors:  Federico Cisnetti; Karine Loth; Philippe Pelupessy; Geoffrey Bodenhausen
Journal:  Chemphyschem       Date:  2004-06-21       Impact factor: 3.102

2.  Quantitative estimation of magnitude and orientation of the CSA tensor from field dependence of longitudinal NMR relaxation rates.

Authors:  P Damberg; J Jarvet; P Allard; A Gräslund
Journal:  J Biomol NMR       Date:  1999-09       Impact factor: 2.835

3.  Determination of sugar conformation in large RNA oligonucleotides from analysis of dipole-dipole cross correlated relaxation by solution NMR spectroscopy.

Authors:  C Richter; C Griesinger; I Felli; P T Cole; G Varani; H Schwalbe
Journal:  J Biomol NMR       Date:  1999-11       Impact factor: 2.835

4.  The effect of noncollinearity of 15N-1H dipolar and 15N CSA tensors and rotational anisotropy on 15N relaxation, CSA/dipolar cross correlation, and TROSY.

Authors:  D Fushman; D Cowburn
Journal:  J Biomol NMR       Date:  1999-02       Impact factor: 2.835

5.  Limited variations in 15N CSA magnitudes and orientations in ubiquitin are revealed by joint analysis of longitudinal and transverse NMR relaxation.

Authors:  Peter Damberg; Jüri Jarvet; Astrid Gräslund
Journal:  J Am Chem Soc       Date:  2005-02-16       Impact factor: 15.419

6.  Determination of calpha chemical shift tensor orientation in peptides by dipolar-modulated chemical shift recoupling NMR spectroscopy.

Authors:  Xiaolan Yao; Mei Hong
Journal:  J Am Chem Soc       Date:  2002-03-20       Impact factor: 15.419

7.  Cross correlations between 13C-1H dipolar interactions and 15N chemical shift anisotropy in nucleic acids.

Authors:  Sapna Ravindranathan; Chul-Hyun Kim; Geoffrey Bodenhausen
Journal:  J Biomol NMR       Date:  2003-12       Impact factor: 2.835

8.  Quantitative measurement of transverse and longitudinal cross-correlation between 13C-1H dipolar interaction and 13C chemical shift anisotropy: application to a 13C-labeled DNA duplex.

Authors:  C Kojima; A Ono; M Kainosho; T L James
Journal:  J Magn Reson       Date:  1999-02       Impact factor: 2.229

9.  Measurement of cross correlation between dipolar coupling and chemical shift anisotropy in the spin relaxation of 13C, 15N-labeled proteins.

Authors:  R Ghose; K Huang; J H Prestegard
Journal:  J Magn Reson       Date:  1998-12       Impact factor: 2.229

10.  Spectral density function mapping using 15N relaxation data exclusively.

Authors:  N A Farrow; O Zhang; A Szabo; D A Torchia; L E Kay
Journal:  J Biomol NMR       Date:  1995-09       Impact factor: 2.835

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  1 in total

1.  Effect of local sugar and base geometry on 13C and 15N magnetic shielding anisotropy in DNA nucleosides.

Authors:  Eva Brumovská; Vladimír Sychrovský; Zuzana Vokácová; Jirí Sponer; Bohdan Schneider; Lukás Trantírek
Journal:  J Biomol NMR       Date:  2008-10-14       Impact factor: 2.835

  1 in total

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