Literature DB >> 11885976

Residual dipolar couplings: synergy between NMR and structural genomics.

Hashim M Al-Hashimi1, Dinshaw J Patel.   

Abstract

Structural genomics is on a quest for the structure and function of a significant fraction of gene products. Current efforts are focusing on structure determination of single-domain proteins, which can readily be targeted by X-ray crystallography, NMR spectroscopy and computational homology modeling. However, comprehensive association of gene products with functions also requires systematic determination of more complex protein structures and other biomolecules participating in cellular processes such as nucleic acids, and characterization of biomolecular interactions and dynamics relevant to function. Such NMR investigations are becoming more feasible, not only due to recent advances in NMR methodology, but also because structural genomics is providing valuable structural information and new experimental and computational tools. The measurement of residual dipolar couplings in partially oriented systems and other new NMR methods will play an important role in this synergistic relationship between NMR and structural genomics. Both an expansion in the domain of NMR application, and important contributions to future structural genomics efforts can be anticipated.

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Year:  2002        PMID: 11885976     DOI: 10.1023/a:1013801714041

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  12 in total

1.  MAMMOTH (matching molecular models obtained from theory): an automated method for model comparison.

Authors:  Angel R Ortiz; Charlie E M Strauss; Osvaldo Olmea
Journal:  Protein Sci       Date:  2002-11       Impact factor: 6.725

2.  Role for NMR in structural genomics.

Authors:  Michael A Kennedy; Gaetano T Montelione; Cheryl H Arrowsmith; John L Markley
Journal:  J Struct Funct Genomics       Date:  2002

3.  Principal component method for assessing structural heterogeneity across multiple alignment media.

Authors:  Jean-Christophe Hus; Rafael Brüschweiler
Journal:  J Biomol NMR       Date:  2002-10       Impact factor: 2.835

4.  Determination of protein backbone structures from residual dipolar couplings.

Authors:  J H Prestegard; K L Mayer; H Valafar; G C Benison
Journal:  Methods Enzymol       Date:  2005       Impact factor: 1.600

5.  Probing Na(+)-induced changes in the HIV-1 TAR conformational dynamics using NMR residual dipolar couplings: new insights into the role of counterions and electrostatic interactions in adaptive recognition.

Authors:  Anette Casiano-Negroni; Xiaoyan Sun; Hashim M Al-Hashimi
Journal:  Biochemistry       Date:  2007-05-09       Impact factor: 3.162

6.  Structure-based protein NMR assignments using native structural ensembles.

Authors:  Mehmet Serkan Apaydin; Vincent Conitzer; Bruce Randall Donald
Journal:  J Biomol NMR       Date:  2008-03-26       Impact factor: 2.835

7.  Automated NMR Assignment and Protein Structure Determination using Sparse Dipolar Coupling Constraints.

Authors:  Bruce R Donald; Jeffrey Martin
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2009-08-01       Impact factor: 9.795

8.  Characterizing the relative orientation and dynamics of RNA A-form helices using NMR residual dipolar couplings.

Authors:  Maximillian H Bailor; Catherine Musselman; Alexandar L Hansen; Kush Gulati; Dinshaw J Patel; Hashim M Al-Hashimi
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

9.  An expectation/maximization nuclear vector replacement algorithm for automated NMR resonance assignments.

Authors:  Christopher James Langmead; Bruce Randall Donald
Journal:  J Biomol NMR       Date:  2004-06       Impact factor: 2.835

10.  Structure of a conserved retroviral RNA packaging element by NMR spectroscopy and cryo-electron tomography.

Authors:  Yasuyuki Miyazaki; Rossitza N Irobalieva; Blanton S Tolbert; Adjoa Smalls-Mantey; Kilali Iyalla; Kelsey Loeliger; Victoria D'Souza; Htet Khant; Michael F Schmid; Eric L Garcia; Alice Telesnitsky; Wah Chiu; Michael F Summers
Journal:  J Mol Biol       Date:  2010-10-08       Impact factor: 5.469

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