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Literature DB >> 20160991

Automated NMR Assignment and Protein Structure Determination using Sparse Dipolar Coupling Constraints.

Bruce R Donald¹, Jeffrey Martin.

Abstract

Entities: Chemical Disease Gene Mutation Species

Year: 2009 PMID： 20160991 PMCID： PMC2755298 DOI： 10.1016/j.pnmrs.2008.12.001

Source DB: PubMed Journal: Prog Nucl Magn Reson Spectrosc ISSN： 0079-6565 Impact factor: 9.795

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141 in total

1. Exact solutions for chemical bond orientations from residual dipolar couplings.

Authors: William J Wedemeyer; Carol A Rohl; Harold A Scherag
Journal: J Biomol NMR Date: 2002-02 Impact factor: 2.835

2. Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA.

Authors: Torsten Herrmann; Peter Güntert; Kurt Wüthrich
Journal: J Mol Biol Date: 2002-05-24 Impact factor: 5.469

3. The influence of temperature on lysozyme crystals. Structure and dynamics of protein and water.

Authors: I V Kurinov; R W Harrison
Journal: Acta Crystallogr D Biol Crystallogr Date: 1995-01-01

4. High-throughput inference of protein-protein interfaces from unassigned NMR data.

Authors: Ramgopal R Mettu; Ryan H Lilien; Bruce Randall Donald
Journal: Bioinformatics Date: 2005-06 Impact factor: 6.937

5. Inferential structure determination.

Authors: Wolfgang Rieping; Michael Habeck; Michael Nilges
Journal: Science Date: 2005-07-08 Impact factor: 47.728

6. Improved Pruning algorithms and Divide-and-Conquer strategies for Dead-End Elimination, with application to protein design.

Authors: Ivelin Georgiev; Ryan H Lilien; Bruce R Donald
Journal: Bioinformatics Date: 2006-07-15 Impact factor: 6.937

7. A new strategy for structure determination of large proteins in solution without deuteration.

Authors: Yingqi Xu; Yu Zheng; Jing-Song Fan; Daiwen Yang
Journal: Nat Methods Date: 2006-11 Impact factor: 28.547

8. Protein backbone angle restraints from searching a database for chemical shift and sequence homology.

Authors: G Cornilescu; F Delaglio; A Bax
Journal: J Biomol NMR Date: 1999-03 Impact factor: 2.835

9. Protein fold recognition through application of residual dipolar coupling data.

Authors: Y Qu; J T Guo; V Olman; Y Xu
Journal: Pac Symp Biocomput Date: 2004

10. An expectation/maximization nuclear vector replacement algorithm for automated NMR resonance assignments.

Authors: Christopher James Langmead; Bruce Randall Donald
Journal: J Biomol NMR Date: 2004-06 Impact factor: 2.835

13 in total

1. Protein loop closure using orientational restraints from NMR data.

Authors: Chittaranjan Tripathy; Jianyang Zeng; Pei Zhou; Bruce Randall Donald
Journal: Proteins Date: 2011-12-13

2. A geometric arrangement algorithm for structure determination of symmetric protein homo-oligomers from NOEs and RDCs.

Authors: Jeffrey W Martin; Anthony K Yan; Chris Bailey-Kellogg; Pei Zhou; Bruce R Donald
Journal: J Comput Biol Date: 2011-10-28 Impact factor: 1.479

3. A Bayesian approach for determining protein side-chain rotamer conformations using unassigned NOE data.

Authors: Jianyang Zeng; Kyle E Roberts; Pei Zhou; Bruce Randall Donald
Journal: J Comput Biol Date: 2011-10-04 Impact factor: 1.479

4. A graphical method for analyzing distance restraints using residual dipolar couplings for structure determination of symmetric protein homo-oligomers.

Authors: Jeffrey W Martin; Anthony K Yan; Chris Bailey-Kellogg; Pei Zhou; Bruce R Donald
Journal: Protein Sci Date: 2011-04-27 Impact factor: 6.725

10. High-resolution protein structure determination starting with a global fold calculated from exact solutions to the RDC equations.

Authors: Jianyang Zeng; Jeffrey Boyles; Chittaranjan Tripathy; Lincong Wang; Anthony Yan; Pei Zhou; Bruce Randall Donald
Journal: J Biomol NMR Date: 2009-08-27 Impact factor: 2.835