Literature DB >> 10508067

Identification of phytoplankton from flow cytometry data by using radial basis function neural networks.

M F Wilkins1, L Boddy, C W Morris, R R Jonker.   

Abstract

We describe here the application of a type of artificial neural network, the Gaussian radial basis function (RBF) network, in the identification of a large number of phytoplankton strains from their 11-dimensional flow cytometric characteristics measured by the European Optical Plankton Analyser instrument. The effect of network parameters on optimization is examined. Optimized RBF networks recognized 34 species of marine and freshwater phytoplankton with 91. 5% success overall. The relative importance of each measured parameter in discriminating these data and the behavior of RBF networks in response to data from "novel" species (species not present in the training data) were analyzed.

Mesh:

Year:  1999        PMID: 10508067      PMCID: PMC91585          DOI: 10.1128/AEM.65.10.4404-4410.1999

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  7 in total

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Authors:  S Demers; J Kim; P Legendre; L Legendre
Journal:  Cytometry       Date:  1992

2.  Flow cytometric discrimination of phytoplankton classes by fluorescence emission and excitation properties.

Authors:  J W Hofstraat; M E de Vreeze; W J van Zeijl; L Peperzak; J C Peeters; H W Balfoort
Journal:  J Fluoresc       Date:  1991-12       Impact factor: 2.217

3.  A comparison of some neural and non-neural methods for identification of phytoplankton from flow cytometry data.

Authors:  M F Wilkins; L Boddy; C W Morris; R Jonker
Journal:  Comput Appl Biosci       Date:  1996-02

4.  Application of neural networks to flow cytometry data analysis and real-time cell classification.

Authors:  D S Frankel; S L Frankel; B J Binder; R F Vogt
Journal:  Cytometry       Date:  1996-04-01

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Authors:  D S Frankel; R J Olson; S L Frankel; S W Chisholm
Journal:  Cytometry       Date:  1989-09

6.  A comparison of Radial Basis Function and backpropagation neural networks for identification of marine phytoplankton from multivariate flow cytometry data.

Authors:  M F Wilkins; C W Morris; L Boddy
Journal:  Comput Appl Biosci       Date:  1994-06

7.  Neural network analysis of flow cytometric data for 40 marine phytoplankton species.

Authors:  L Boddy; C W Morris; M F Wilkins; G A Tarran; P H Burkill
Journal:  Cytometry       Date:  1994-04-01
  7 in total
  9 in total

1.  Differentiation of Phytophthora infestans sporangia from other airborne biological particles by flow cytometry.

Authors:  Jennifer P Day; Douglas B Kell; Gareth W Griffith
Journal:  Appl Environ Microbiol       Date:  2002-01       Impact factor: 4.792

2.  Automated species identification: why not?

Authors:  Kevin J Gaston; Mark A O'Neill
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2004-04-29       Impact factor: 6.237

3.  Comparison of statistical methods for identification of Streptococcus thermophilus, Enterococcus faecalis, and Enterococcus faecium from randomly amplified polymorphic DNA patterns.

Authors:  G Moschetti; G Blaiotta; F Villani; S Coppola; E Parente
Journal:  Appl Environ Microbiol       Date:  2001-05       Impact factor: 4.792

4.  Identification of Cryptosporidium parvum oocysts by an artificial neural network approach.

Authors:  Kenneth W Widmer; Kevin H Oshima; Suresh D Pillai
Journal:  Appl Environ Microbiol       Date:  2002-03       Impact factor: 4.792

Review 5.  Self-mixing thin-slice solid-state laser metrology.

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Journal:  Sensors (Basel)       Date:  2011-02-15       Impact factor: 3.576

6.  Combining high-throughput imaging flow cytometry and deep learning for efficient species and life-cycle stage identification of phytoplankton.

Authors:  Susanne Dunker; David Boho; Jana Wäldchen; Patrick Mäder
Journal:  BMC Ecol       Date:  2018-12-03       Impact factor: 2.964

7.  A survey of flow cytometry data analysis methods.

Authors:  Ali Bashashati; Ryan R Brinkman
Journal:  Adv Bioinformatics       Date:  2009-12-06

8.  A preliminary study on automated freshwater algae recognition and classification system.

Authors:  Mogeeb A A Mosleh; Hayat Manssor; Sorayya Malek; Pozi Milow; Aishah Salleh
Journal:  BMC Bioinformatics       Date:  2012-12-13       Impact factor: 3.169

9.  Flow cytometry combined with viSNE for the analysis of microbial biofilms and detection of microplastics.

Authors:  Linn Sgier; Remo Freimann; Anze Zupanic; Alexandra Kroll
Journal:  Nat Commun       Date:  2016-05-18       Impact factor: 14.919

  9 in total

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