| Literature DB >> 11872152 |
Raphael Rosch1, Uwe Klinge, Zhongyi Si, Karsten Junge, Bernd Klosterhalfen, Volker Schumpelick.
Abstract
BACKGROUND: Abnormal collagen metabolism is thought to play an important role in the development of primary inguinal hernia. This is underlined by detection of altered collagen metabolism and structural changes of the tissue in patients with primary inguinal hernia. However, it is still unknown whether these alterations reflect a basic dysfunction of the collagen synthesis, or of collagen degradation.Entities:
Year: 2002 PMID: 11872152 PMCID: PMC65699 DOI: 10.1186/1471-2350-3-2
Source DB: PubMed Journal: BMC Med Genet ISSN: 1471-2350 Impact factor: 2.103
Primer sets used for RT-PCR
| type I collagen | 5'CCCCCTCCCCAGCCACAAAG-3' 5'-TCTTGGTCGGTGGGTGACTCT-3' | 360 | 44°C |
| type III collagen | 5'-CCAAACTCTATCTGAA-3' 5'-GGACTCATAGAATACA-3' | 449 | 44°C |
| MMP-1 | 5'-AGGTTATCCCAAAATGATAG-3' 5'-TGCAGTTGAACCAGCTATTA-3' | 173 | 55°C |
| MMP-13 | 5'-TTCTGGCACATGCTTTTCCTC-3' 5'-GGTTGGGGTCTTCATCTCCTG-3' | 273 | 55°C |
| β-actin | 5'-ATCTGGCACCACACTTCTACA-3' 5'-GTTTCGTGGATGCCACAGGACT-3' | 577 | 55°C |
Figure 1PCR products analysis of type I and type III collagen samples and β-actin optimisation. 1, 2 and 3) controls; 4, 5 and 6) inguinal hernias; 7) standard marker, a) β-actin amplification with annealing temperature at 60°C of type I collagen; b) β-actin amplification with annealing temperature at 44°C of type III collagen; c) type I collagen; d) type III collagen
Figure 2Northern Blot analysis of type I and type III collagen mRNA from cultured fibroblasts. The ratio of 28S to 18S rRNA (ribosomal RNA) was approximately 2 : 1 by ethidium bromide staining of denaturing agarose gel electrophoresis, indicating that no gross degradation of extracted RNA occurred. 1. primary inguinal hernia; 2 control
Figure 3PCR products analysis of MMP-1 samples. 1, 2 and 3) controls; 4, 5 and 6) primary hernias; 7) standard marker.