Literature DB >> 11828455

Backbone and side-chain 13C and 15N signal assignments of the alpha-spectrin SH3 domain by magic angle spinning solid-state NMR at 17.6 Tesla.

J Pauli1, M Baldus, B van Rossum, H de Groot, H Oschkinat.   

Abstract

The backbone and side-chain 13C and 15N signals of a solid 62-residue (u-13C,15N)-labelled protein containing the alpha-spectrin SH3 domain were assigned by two-dimensional (2D) magic angle spinning (MAS) 15N-13C and 13C-13C dipolar correlation spectroscopy at 17.6 T. The side-chain signal sets of the individual amino acids were identified by 2D 13C-13C proton-driven spin diffusion and dipolar recoupling experiments. Correlations to the respective backbone nitrogen signals were established by 2D NCACX (CX=any carbon atom) experiments, which contain a proton-nitrogen and a nitrogen-carbon cross-polarisation step followed by a carbon-carbon homonuclear transfer unit. Interresidue correlations leading to sequence-specific assignments were obtained from 2D NCOCX experiments. The assignment is nearly complete for the SH3 domain residues 7-61, while the signals of the N- and C-terminal residues 1-6 and 62, respectively, outside the domain boundaries are not detected in our MAS spectra. The resolution observed in these spectra raises expectations that receptor-bound protein ligands and slightly larger proteins (up to 20 kDa) can be readily assigned in the near future by using three-dimensional versions of the applied or analogous techniques.

Entities:  

Mesh:

Substances:

Year:  2001        PMID: 11828455     DOI: 10.1002/1439-7633(20010401)2:4<272::AID-CBIC272>3.0.CO;2-2

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  112 in total

1.  Secondary chemical shifts in immobilized peptides and proteins: a qualitative basis for structure refinement under magic angle spinning.

Authors:  S Luca; D V Filippov; J H van Boom; H Oschkinat; H J de Groot; M Baldus
Journal:  J Biomol NMR       Date:  2001-08       Impact factor: 2.835

2.  Assignment of amide proton signals by combined evaluation of HN, NN and HNCA MAS-NMR correlation spectra.

Authors:  Barth-Jan van Rossum; Federica Castellani; Jutta Pauli; Kristina Rehbein; J Hollander; Huub J M de Groot; Hartmut Oschkinat
Journal:  J Biomol NMR       Date:  2003-03       Impact factor: 2.835

3.  Broadband RFDR with adiabatic inversion pulses.

Authors:  Jörg Leppert; Bert Heise; Oliver Ohlenschläger; Matthias Görlach; Ramadurai Ramachandran
Journal:  J Biomol NMR       Date:  2003-05       Impact factor: 2.835

4.  Chemical shift correlation via RFDR: elimination of resonance offset effects.

Authors:  Bert Heise; Jörg Leppert; Oliver Ohlenschläger; Matthias Görlach; Ramadurai Ramachandran
Journal:  J Biomol NMR       Date:  2002-11       Impact factor: 2.835

5.  Unraveling the secrets of Alzheimer's beta-amyloid fibrils.

Authors:  Lynmarie K Thompson
Journal:  Proc Natl Acad Sci U S A       Date:  2003-01-13       Impact factor: 11.205

6.  De novo determination of peptide structure with solid-state magic-angle spinning NMR spectroscopy.

Authors:  Chad M Rienstra; Lisa Tucker-Kellogg; Christopher P Jaroniec; Morten Hohwy; Bernd Reif; Michael T McMahon; Bruce Tidor; Tomas Lozano-Pérez; Robert G Griffin
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-29       Impact factor: 11.205

Review 7.  Structure determination of membrane proteins by NMR spectroscopy.

Authors:  Stanley J Opella; Francesca M Marassi
Journal:  Chem Rev       Date:  2004-08       Impact factor: 60.622

Review 8.  Recent developments in solid-state magic-angle spinning, nuclear magnetic resonance of fully and significantly isotopically labelled peptides and proteins.

Authors:  Suzana K Straus
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2004-06-29       Impact factor: 6.237

9.  Solid state NMR sequential resonance assignments and conformational analysis of the 2x10.4 kDa dimeric form of the Bacillus subtilis protein Crh.

Authors:  Anja Böckmann; Adam Lange; Anne Galinier; Sorin Luca; Nicolas Giraud; Michel Juy; Henrike Heise; Roland Montserret; François Penin; Marc Baldus
Journal:  J Biomol NMR       Date:  2003-12       Impact factor: 2.835

10.  3D ¹⁵N/¹⁵N/¹H chemical shift correlation experiment utilizing an RFDR-based ¹H/¹H mixing period at 100 kHz MAS.

Authors:  Yusuke Nishiyama; Michal Malon; Yuji Ishii; Ayyalusamy Ramamoorthy
Journal:  J Magn Reson       Date:  2014-04-19       Impact factor: 2.229

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.