Literature DB >> 11782446

The KH-type RNA-binding protein PSI is required for Drosophila viability, male fertility, and cellular mRNA processing.

Emmanuel Labourier1, Marco Blanchette, Jennie W Feiger, Melissa D Adams, Donald C Rio.   

Abstract

Direct interactions between RNA-binding proteins and snRNP particles modulate eukaryotic pre-mRNA processing patterns to control gene expression. Here, we report that the conserved U1 snRNP-interacting RNA-binding protein PSI is essential for Drosophila viability. A null PSI mutation is recessive lethal at the first-instar larval stage, and lethality is fully rescued by transgenes expressing the PSI protein. A mutant transgene that lacks the PSI-U1 snRNP-interaction domain restores viability but shows courtship behavior abnormalities and meiosis defects during spermatogenesis, resulting in a complete male sterility phenotype. Using cDNA microarrays, we have identified specific target mRNAs with altered expression profiles in these mutant males. A subset of these transcripts is also found associated with PSI in endogenous immunopurified ribonucleoprotein complexes. One specific target, the hrp40/squid transcript, shows an altered pre-mRNA splicing pattern in PSI mutant testes. We conclude that a functional association between the PSI protein and the spliceosomal U1 snRNP particle is required for normal Drosophila development and for the processing of specific PSI-interacting cellular transcripts. These results also validate the use of cDNA microarrays to characterize in vivo RNA-processing defects and alternative pre-mRNA splicing patterns.

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Year:  2002        PMID: 11782446      PMCID: PMC155316          DOI: 10.1101/gad.948602

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  45 in total

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Authors:  B R Graveley
Journal:  Trends Genet       Date:  2001-02       Impact factor: 11.639

Review 3.  Protein diversity from alternative splicing: a challenge for bioinformatics and post-genome biology.

Authors:  D L Black
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4.  Somatic support cells restrict germline stem cell self-renewal and promote differentiation.

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Journal:  Nature       Date:  2000-10-12       Impact factor: 49.962

Review 5.  Alternative pre-mRNA splicing: the logic of combinatorial control.

Authors:  C W Smith; J Valcárcel
Journal:  Trends Biochem Sci       Date:  2000-08       Impact factor: 13.807

6.  Somatic control over the germline stem cell lineage during Drosophila spermatogenesis.

Authors:  J Tran; T J Brenner; S DiNardo
Journal:  Nature       Date:  2000-10-12       Impact factor: 49.962

7.  Modulation of P-element pre-mRNA splicing by a direct interaction between PSI and U1 snRNP 70K protein.

Authors:  E Labourier; M D Adams; D C Rio
Journal:  Mol Cell       Date:  2001-08       Impact factor: 17.970

8.  Purification of Drosophila snRNPs and characterization of two populations of functional U1 particles.

Authors:  E Labourier; D C Rio
Journal:  RNA       Date:  2001-03       Impact factor: 4.942

Review 9.  Pre-messenger RNA processing factors in the Drosophila genome.

Authors:  S M Mount; H K Salz
Journal:  J Cell Biol       Date:  2000-07-24       Impact factor: 10.539

10.  Selection of alternative 5' splice sites: role of U1 snRNP and models for the antagonistic effects of SF2/ASF and hnRNP A1.

Authors:  I C Eperon; O V Makarova; A Mayeda; S H Munroe; J F Cáceres; D G Hayward; A R Krainer
Journal:  Mol Cell Biol       Date:  2000-11       Impact factor: 4.272

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  13 in total

1.  ZBP2 facilitates binding of ZBP1 to beta-actin mRNA during transcription.

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Review 2.  Mechanisms and Regulation of Alternative Pre-mRNA Splicing.

Authors:  Yeon Lee; Donald C Rio
Journal:  Annu Rev Biochem       Date:  2015-03-12       Impact factor: 23.643

Review 3.  P Transposable Elements in Drosophila and other Eukaryotic Organisms.

Authors:  Sharmistha Majumdar; Donald C Rio
Journal:  Microbiol Spectr       Date:  2015-04

4.  Global analysis of positive and negative pre-mRNA splicing regulators in Drosophila.

Authors:  Marco Blanchette; Richard E Green; Steven E Brenner; Donald C Rio
Journal:  Genes Dev       Date:  2005-06-01       Impact factor: 11.361

5.  Long-term and short-term evolutionary impacts of transposable elements on Drosophila.

Authors:  Yuh Chwen G Lee; Charles H Langley
Journal:  Genetics       Date:  2012-09-20       Impact factor: 4.562

6.  Distinct contributions of KH domains to substrate binding affinity of Drosophila P-element somatic inhibitor protein.

Authors:  Nikolas H Chmiel; Donald C Rio; Jennifer A Doudna
Journal:  RNA       Date:  2006-02       Impact factor: 4.942

7.  Differentiation-induced colocalization of the KH-type splicing regulatory protein with polypyrimidine tract binding protein and the c-src pre-mRNA.

Authors:  Megan P Hall; Sui Huang; Douglas L Black
Journal:  Mol Biol Cell       Date:  2003-12-02       Impact factor: 4.138

8.  The SR family proteins B52 and dASF/SF2 modulate development of the Drosophila visual system by regulating specific RNA targets.

Authors:  Mathieu Gabut; Jérôme Dejardin; Jamal Tazi; Johann Soret
Journal:  Mol Cell Biol       Date:  2007-02-05       Impact factor: 4.272

9.  The PSI-U1 snRNP interaction regulates male mating behavior in Drosophila.

Authors:  Qingqing Wang; J Matthew Taliaferro; Ugne Klibaite; Valérie Hilgers; Joshua W Shaevitz; Donald C Rio
Journal:  Proc Natl Acad Sci U S A       Date:  2016-04-25       Impact factor: 11.205

10.  JUM is a computational method for comprehensive annotation-free analysis of alternative pre-mRNA splicing patterns.

Authors:  Qingqing Wang; Donald C Rio
Journal:  Proc Natl Acad Sci U S A       Date:  2018-08-13       Impact factor: 11.205

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