Literature DB >> 11217851

Functional annotation of a full-length mouse cDNA collection.

J Kawai1, A Shinagawa, K Shibata, M Yoshino, M Itoh, Y Ishii, T Arakawa, A Hara, Y Fukunishi, H Konno, J Adachi, S Fukuda, K Aizawa, M Izawa, K Nishi, H Kiyosawa, S Kondo, I Yamanaka, T Saito, Y Okazaki, T Gojobori, H Bono, T Kasukawa, R Saito, K Kadota, H Matsuda, M Ashburner, S Batalov, T Casavant, W Fleischmann, T Gaasterland, C Gissi, B King, H Kochiwa, P Kuehl, S Lewis, Y Matsuo, I Nikaido, G Pesole, J Quackenbush, L M Schriml, F Staubli, R Suzuki, M Tomita, L Wagner, T Washio, K Sakai, T Okido, M Furuno, H Aono, R Baldarelli, G Barsh, J Blake, D Boffelli, N Bojunga, P Carninci, M F de Bonaldo, M J Brownstein, C Bult, C Fletcher, M Fujita, M Gariboldi, S Gustincich, D Hill, M Hofmann, D A Hume, M Kamiya, N H Lee, P Lyons, L Marchionni, J Mashima, J Mazzarelli, P Mombaerts, P Nordone, B Ring, M Ringwald, I Rodriguez, N Sakamoto, H Sasaki, K Sato, C Schönbach, T Seya, Y Shibata, K F Storch, H Suzuki, K Toyo-oka, K H Wang, C Weitz, C Whittaker, L Wilming, A Wynshaw-Boris, K Yoshida, Y Hasegawa, H Kawaji, S Kohtsuki, Y Hayashizaki.   

Abstract

The RIKEN Mouse Gene Encyclopaedia Project, a systematic approach to determining the full coding potential of the mouse genome, involves collection and sequencing of full-length complementary DNAs and physical mapping of the corresponding genes to the mouse genome. We organized an international functional annotation meeting (FANTOM) to annotate the first 21,076 cDNAs to be analysed in this project. Here we describe the first RIKEN clone collection, which is one of the largest described for any organism. Analysis of these cDNAs extends known gene families and identifies new ones.

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Year:  2001        PMID: 11217851     DOI: 10.1038/35055500

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  244 in total

1.  Delineating developmental and metabolic pathways in vivo by expression profiling using the RIKEN set of 18,816 full-length enriched mouse cDNA arrays.

Authors:  R Miki; K Kadota; H Bono; Y Mizuno; Y Tomaru; P Carninci; M Itoh; K Shibata; J Kawai; H Konno; S Watanabe; K Sato; Y Tokusumi; N Kikuchi; Y Ishii; Y Hamaguchi; I Nishizuka; H Goto; H Nitanda; S Satomi; A Yoshiki; M Kusakabe; J L DeRisi; M B Eisen; V R Iyer; P O Brown; M Muramatsu; H Shimada; Y Okazaki; Y Hayashizaki
Journal:  Proc Natl Acad Sci U S A       Date:  2001-02-27       Impact factor: 11.205

2.  Generation and comparative analysis of approximately 3.3 Mb of mouse genomic sequence orthologous to the region of human chromosome 7q11.23 implicated in Williams syndrome.

Authors:  Udaya DeSilva; Laura Elnitski; Jacquelyn R Idol; Johannah L Doyle; Weiniu Gan; James W Thomas; Scott Schwartz; Nicole L Dietrich; Stephen M Beckstrom-Sternberg; Jennifer C McDowell; Robert W Blakesley; Gerard G Bouffard; Pamela J Thomas; Jeffrey W Touchman; Webb Miller; Eric D Green
Journal:  Genome Res       Date:  2002-01       Impact factor: 9.043

3.  GenBank.

Authors:  Dennis A Benson; Ilene Karsch-Mizrachi; David J Lipman; James Ostell; Barbara A Rapp; David L Wheeler
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

4.  READ: RIKEN Expression Array Database.

Authors:  Hidemasa Bono; Takeya Kasukawa; Yoshihide Hayashizaki; Yasushi Okazaki
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

5.  Predicting gene ontology functions from ProDom and CDD protein domains.

Authors:  Jonathan Schug; Sharon Diskin; Joan Mazzarelli; Brian P Brunk; Christian J Stoeckert
Journal:  Genome Res       Date:  2002-04       Impact factor: 9.043

6.  Oligo(dT) primer generates a high frequency of truncated cDNAs through internal poly(A) priming during reverse transcription.

Authors:  Douglas Kyung Nam; Sanggyu Lee; Guolin Zhou; Xiaohong Cao; Clarence Wang; Terry Clark; Jianjun Chen; Janet D Rowley; San Ming Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-23       Impact factor: 11.205

Review 7.  Surviving in a sea of data: a survey of plant genome data resources and issues in building data management systems.

Authors:  Leonore Reiser; Lukas A Mueller; Seung Yon Rhee
Journal:  Plant Mol Biol       Date:  2002-01       Impact factor: 4.076

8.  Interaction generality, a measurement to assess the reliability of a protein-protein interaction.

Authors:  Rintaro Saito; Harukazu Suzuki; Yoshihide Hayashizaki
Journal:  Nucleic Acids Res       Date:  2002-03-01       Impact factor: 16.971

9.  Exploration of novel motifs derived from mouse cDNA sequences.

Authors:  Hideya Kawaji; Christian Schönbach; Yo Matsuo; Jun Kawai; Yasushi Okazaki; Yoshihide Hayashizaki; Hideo Matsuda
Journal:  Genome Res       Date:  2002-03       Impact factor: 9.043

10.  UniGene cDNA array-based monitoring of transcriptome changes during mouse placental development.

Authors:  M Hemberger; J C Cross; H H Ropers; H Lehrach; R Fundele; H Himmelbauer
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-06       Impact factor: 11.205

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