Literature DB >> 16020525

Electrolytic transport through a synthetic nanometer-diameter pore.

Chuen Ho1, Rui Qiao, Jiunn B Heng, Aveek Chatterjee, Rolf J Timp, Narayana R Aluru, Gregory Timp.   

Abstract

We have produced single, synthetic nanometer-diameter pores by using a tightly focused, high-energy electron beam to sputter atoms in 10-nm-thick silicon nitride membranes. Subsequently, we measured the ionic conductance as a function of time, bath concentration, and pore diameter to infer the conductivity and ionic mobility through the pores. The pore conductivity is found to be much larger than the bulk conductivity for dilute bath concentrations, where the Debye length is larger than the pore radius, whereas it is comparable with or less than the bulk for high bath concentrations. We interpret these observations by using multiscale simulations of the ion transport through the pores. Molecular dynamics is used to estimate the ion mobility, and ion transport in the pore is described by the coupled Poisson-Nernst-Planck and the Stokes equations that are solved self-consistently for the ion concentration and velocity and electrical potential. We find that the measurements are consistent with the presence of fixed negative charge in the pore wall and a reduction of the ion mobility because of the fixed charge and the ion proximity to the pore wall.

Entities:  

Year:  2005        PMID: 16020525      PMCID: PMC1180756          DOI: 10.1073/pnas.0500796102

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  11 in total

1.  Model channel ion currents in NaCl-extended simple point charge water solution with applied-field molecular dynamics.

Authors:  P S Crozier; D Henderson; R L Rowley; D D Busath
Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

2.  Ion-beam sculpting at nanometre length scales.

Authors:  J Li; D Stein; C McMullan; D Branton; M J Aziz; J A Golovchenko
Journal:  Nature       Date:  2001-07-12       Impact factor: 49.962

3.  Metastability and nucleation in capillary condensation

Authors: 
Journal:  Phys Rev Lett       Date:  2000-03-13       Impact factor: 9.161

4.  Fabrication of a synthetic nanopore ion pump.

Authors:  Z Siwy; A Fuliński
Journal:  Phys Rev Lett       Date:  2002-10-18       Impact factor: 9.161

5.  Fabrication of solid-state nanopores with single-nanometre precision.

Authors:  A J Storm; J H Chen; X S Ling; H W Zandbergen; C Dekker
Journal:  Nat Mater       Date:  2003-08       Impact factor: 43.841

6.  A microscopic view of ion conduction through the K+ channel.

Authors:  Simon Bernèche; Benoît Roux
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-01       Impact factor: 11.205

7.  Surface-charge-governed ion transport in nanofluidic channels.

Authors:  Derek Stein; Maarten Kruithof; Cees Dekker
Journal:  Phys Rev Lett       Date:  2004-07-15       Impact factor: 9.161

8.  Microscopic Kinetics of DNA Translocation through synthetic nanopores.

Authors:  Aleksij Aksimentiev; Jiunn B Heng; Gregory Timp; Klaus Schulten
Journal:  Biophys J       Date:  2004-09       Impact factor: 4.033

9.  Wetting transitions in a cylindrical pore.

Authors: 
Journal:  Phys Rev Lett       Date:  1990-10-08       Impact factor: 9.161

Review 10.  The ubiquitous presence of channels with wide lumens and their gating by voltage.

Authors:  A Finkelstein
Journal:  Ann N Y Acad Sci       Date:  1985       Impact factor: 5.691

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  51 in total

1.  Direct observation of stick-slip movements of water nanodroplets induced by an electron beam.

Authors:  Utkur M Mirsaidov; Haimei Zheng; Dipanjan Bhattacharya; Yosune Casana; Paul Matsudaira
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-18       Impact factor: 11.205

2.  DNA translocation through an array of kinked nanopores.

Authors:  Zhu Chen; Yingbing Jiang; Darren R Dunphy; David P Adams; Carter Hodges; Nanguo Liu; Nan Zhang; George Xomeritakis; Xiaozhong Jin; N R Aluru; Steven J Gaik; Hugh W Hillhouse; C Jeffrey Brinker
Journal:  Nat Mater       Date:  2010-08       Impact factor: 43.841

3.  Using a nanopore for single molecule detection and single cell transfection.

Authors:  Edward M Nelson; Volker Kurz; Jiwook Shim; Winston Timp; Gregory Timp
Journal:  Analyst       Date:  2012-05-29       Impact factor: 4.616

4.  Deciphering ionic current signatures of DNA transport through a nanopore.

Authors:  Aleksei Aksimentiev
Journal:  Nanoscale       Date:  2010-02-02       Impact factor: 7.790

Review 5.  Single molecule sensing by nanopores and nanopore devices.

Authors:  Li-Qun Gu; Ji Wook Shim
Journal:  Analyst       Date:  2009-12-22       Impact factor: 4.616

6.  The electromechanics of DNA in a synthetic nanopore.

Authors:  J B Heng; A Aksimentiev; C Ho; P Marks; Y V Grinkova; S Sligar; K Schulten; G Timp
Journal:  Biophys J       Date:  2005-11-11       Impact factor: 4.033

7.  The effect of translocating cylindrical particles on the ionic current through a nanopore.

Authors:  Hui Liu; Shizhi Qian; Haim H Bau
Journal:  Biophys J       Date:  2006-12-01       Impact factor: 4.033

8.  Detection of DNA sequences using an alternating electric field in a nanopore capacitor.

Authors:  Grigori Sigalov; Jeffrey Comer; Gregory Timp; Aleksei Aksimentiev
Journal:  Nano Lett       Date:  2007-12-11       Impact factor: 11.189

Review 9.  The role of molecular modeling in bionanotechnology.

Authors:  Deyu Lu; Aleksei Aksimentiev; Amy Y Shih; Eduardo Cruz-Chu; Peter L Freddolino; Anton Arkhipov; Klaus Schulten
Journal:  Phys Biol       Date:  2006-02-02       Impact factor: 2.583

Review 10.  Aptamer-encoded nanopore for ultrasensitive detection of bioterrorist agent ricin at single-molecule resolution.

Authors:  Li-Qun Gu; Shu Ding; Changlu Gao
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2009
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