Literature DB >> 11118513

A model of calcium channels.

B Corry1, T W Allen, S Kuyucak, S H Chung.   

Abstract

We propose a model of calcium channels that can explain most of their observed properties, including the anomalous mole fraction effect and mutation of the glutamate residues. The structure grossly resembles that of the KcsA potassium channel except for the presence of an extracellular vestibule and a shorter selectivity filter containing four glutamate residues. Using this model in electrostatic calculations and Brownian dynamics simulations, we study mechanisms of ion permeation and selectivity in the channel. Potential energy profiles calculated for multiple ions in the channel provide explanations of ion permeation, the block of Na(+) currents by Ca(2+) ions, and many other observed properties. Brownian dynamics simulations provide quantitative predictions for the channel currents which reproduce available experimental data.

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Year:  2000        PMID: 11118513     DOI: 10.1016/s0005-2736(00)00330-8

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  6 in total

1.  Model channel ion currents in NaCl-extended simple point charge water solution with applied-field molecular dynamics.

Authors:  P S Crozier; D Henderson; R L Rowley; D D Busath
Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

2.  A model of the glycine receptor deduced from Brownian dynamics studies.

Authors:  Megan O'Mara; Peter H Barry; Shin-Ho Chung
Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-20       Impact factor: 11.205

3.  Permeation properties of the hair cell mechanotransducer channel provide insight into its molecular structure.

Authors:  B Pan; J Waguespack; M E Schnee; C LeBlanc; A J Ricci
Journal:  J Neurophysiol       Date:  2012-02-08       Impact factor: 2.714

4.  Steric selectivity in Na channels arising from protein polarization and mobile side chains.

Authors:  Dezso Boda; Wolfgang Nonner; Mónika Valiskó; Douglas Henderson; Bob Eisenberg; Dirk Gillespie
Journal:  Biophys J       Date:  2007-05-25       Impact factor: 4.033

Review 5.  Computational methods of studying the binding of toxins from venomous animals to biological ion channels: theory and applications.

Authors:  Dan Gordon; Rong Chen; Shin-Ho Chung
Journal:  Physiol Rev       Date:  2013-04       Impact factor: 37.312

6.  Na(+)/Ca(2+) selectivity in the bacterial voltage-gated sodium channel NavAb.

Authors:  Ben Corry
Journal:  PeerJ       Date:  2013-02-12       Impact factor: 2.984

  6 in total

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