Literature DB >> 11718478

Simultaneous prediction of aqueous solubility and octanol/water partition coefficient based on descriptors derived from molecular structure.

D J Livingstone1, M G Ford, J J Huuskonen, D W Salt.   

Abstract

It has been shown that water solubility and octanol/water partition coefficient for a large diverse set of compounds can be predicted simultaneously using molecular descriptors derived solely from a two dimensional representation of molecular structure. These properties have been modelled using multiple linear regression, artificial neural networks and a statistical method known as canonical correlation analysis. The neural networks give slightly better models both in terms of fitting and prediction presumably due to the fact that they include non-linear terms. The statistical methods, on the other hand, provide information concerning the explanation of variance and allow easy interrogation of the models. Models were fitted using a training set of 552 compounds, a validation set and test set each containing 68 molecules and two separate literature test sets for solubility and partition.

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Year:  2001        PMID: 11718478     DOI: 10.1023/a:1012284411691

Source DB:  PubMed          Journal:  J Comput Aided Mol Des        ISSN: 0920-654X            Impact factor:   3.686


  16 in total

1.  Estimation of aqueous solubility for a diverse set of organic compounds based on molecular topology

Authors: 
Journal:  J Chem Inf Comput Sci       Date:  2000-05

2.  Prediction of aqueous solubility for a diverse set of organic compounds based on atom-type electrotopological state indices.

Authors:  J Huuskonen; J Rantanen; D Livingstone
Journal:  Eur J Med Chem       Date:  2000-12       Impact factor: 6.514

3.  Estimation of aqueous solubility of organic molecules by the group contribution approach. Application to the study of biodegradation.

Authors:  G Klopman; S Wang; D M Balthasar
Journal:  J Chem Inf Comput Sci       Date:  1992 Sep-Oct

4.  A new method for the estimation of the aqueous solubility of organic compounds.

Authors:  N Bodor; M J Huang
Journal:  J Pharm Sci       Date:  1992-09       Impact factor: 3.534

5.  Prediction of aqueous solubility of organic chemicals based on molecular structure.

Authors:  N N Nirmalakhandan; R E Speece
Journal:  Environ Sci Technol       Date:  1988-03-01       Impact factor: 9.028

6.  META. 1. A program for the evaluation of metabolic transformation of chemicals.

Authors:  G Klopman; M Dimayuga; J Talafous
Journal:  J Chem Inf Comput Sci       Date:  1994 Nov-Dec

7.  Neural network studies. 2. Variable selection.

Authors:  I V Tetko; A E Villa; D J Livingstone
Journal:  J Chem Inf Comput Sci       Date:  1996 Jul-Aug

8.  Neural network modeling for estimation of the aqueous solubility of structurally related drugs.

Authors:  J Huuskonen; M Salo; J Taskinen
Journal:  J Pharm Sci       Date:  1997-04       Impact factor: 3.534

9.  Atom/fragment contribution method for estimating octanol-water partition coefficients.

Authors:  W M Meylan; P H Howard
Journal:  J Pharm Sci       Date:  1995-01       Impact factor: 3.534

10.  Neural network modeling for estimation of partition coefficient based on atom-type electrotopological state indices

Authors: 
Journal:  J Chem Inf Comput Sci       Date:  2000-07
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  15 in total

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2.  An automated PLS search for biologically relevant QSAR descriptors.

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Journal:  J Comput Aided Mol Des       Date:  2004 Jul-Sep       Impact factor: 3.686

3.  Descriptor collision and confusion: toward the design of descriptors to mask chemical structures.

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Journal:  J Comput Aided Mol Des       Date:  2005-12-02       Impact factor: 3.686

4.  Lead-like, drug-like or "Pub-like": how different are they?

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5.  Estimating the domain of applicability for machine learning QSAR models: a study on aqueous solubility of drug discovery molecules.

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Journal:  J Comput Aided Mol Des       Date:  2007-12-01       Impact factor: 3.686

6.  Estimating the domain of applicability for machine learning QSAR models: a study on aqueous solubility of drug discovery molecules.

Authors:  Timon Sebastian Schroeter; Anton Schwaighofer; Sebastian Mika; Antonius Ter Laak; Detlev Suelzle; Ursula Ganzer; Nikolaus Heinrich; Klaus-Robert Müller
Journal:  J Comput Aided Mol Des       Date:  2007-07-14       Impact factor: 3.686

7.  Prediction of protein solubility from calculation of transfer free energy.

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Journal:  Biophys J       Date:  2008-05-30       Impact factor: 4.033

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9.  Structure-toxicity relationships of nitroaromatic compounds.

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Journal:  Mol Divers       Date:  2006-05-19       Impact factor: 2.943

Review 10.  Hydrophobicity--shake flasks, protein folding and drug discovery.

Authors:  Aurijit Sarkar; Glen E Kellogg
Journal:  Curr Top Med Chem       Date:  2010       Impact factor: 3.295

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