Literature DB >> 10850781

Estimation of aqueous solubility for a diverse set of organic compounds based on molecular topology

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Abstract

An accurate and generally applicable method for estimating aqueous solubilities for a diverse set of 1297 organic compounds based on multilinear regression and artificial neural network modeling was developed. Molecular connectivity, shape, and atom-type electrotopological state (E-state) indices were used as structural parameters. The data set was divided into a training set of 884 compounds and a randomly chosen test set of 413 compounds. The structural parameters in a 30-12-1 artificial neural network included 24 atom-type E-state indices and six other topological indices, and for the test set, a predictive r2 = 0.92 and s = 0.60 were achieved. With the same parameters the statistics in the multilinear regression were r2 = 0.88 and s = 0.71, respectively.

Year:  2000        PMID: 10850781     DOI: 10.1021/ci9901338

Source DB:  PubMed          Journal:  J Chem Inf Comput Sci        ISSN: 0095-2338


  41 in total

1.  Simultaneous prediction of aqueous solubility and octanol/water partition coefficient based on descriptors derived from molecular structure.

Authors:  D J Livingstone; M G Ford; J J Huuskonen; D W Salt
Journal:  J Comput Aided Mol Des       Date:  2001-08       Impact factor: 3.686

2.  Estimation of aqueous solubility of organic compounds with QSPR approach.

Authors:  Hua Gao; Veerabahu Shanmugasundaram; Pil Lee
Journal:  Pharm Res       Date:  2002-04       Impact factor: 4.200

3.  Solubility prediction by recursive partitioning.

Authors:  Xiaoyang Xia; Edward Maliski; Janet Cheetham; Leszek Poppe
Journal:  Pharm Res       Date:  2003-10       Impact factor: 4.200

4.  Validation subset selections for extrapolation oriented QSPAR models.

Authors:  Csaba Szántai-Kis; István Kövesdi; György Kéri; László Orfi
Journal:  Mol Divers       Date:  2003       Impact factor: 2.943

Review 5.  Neural networks as robust tools in drug lead discovery and development.

Authors:  David A Winkler
Journal:  Mol Biotechnol       Date:  2004-06       Impact factor: 2.695

6.  Linear and nonlinear functions on modeling of aqueous solubility of organic compounds by two structure representation methods.

Authors:  Aixia Yan; Johann Gasteiger; Michael Krug; Soheila Anzali
Journal:  J Comput Aided Mol Des       Date:  2004-02       Impact factor: 3.686

7.  Secure analysis of distributed chemical databases without data integration.

Authors:  Alan F Karr; Jun Feng; Xiaodong Lin; Ashish P Sanil; S Stanley Young; Jerome P Reiter
Journal:  J Comput Aided Mol Des       Date:  2005-11-03       Impact factor: 3.686

8.  Automated QSPR through Competitive Workflow.

Authors:  J Cartmell; S Enoch; D Krstajic; D E Leahy
Journal:  J Comput Aided Mol Des       Date:  2006-01-17       Impact factor: 3.686

9.  Estimating the domain of applicability for machine learning QSAR models: a study on aqueous solubility of drug discovery molecules.

Authors:  Timon Sebastian Schroeter; Anton Schwaighofer; Sebastian Mika; Antonius Ter Laak; Detlev Suelzle; Ursula Ganzer; Nikolaus Heinrich; Klaus-Robert Müller
Journal:  J Comput Aided Mol Des       Date:  2007-12-01       Impact factor: 3.686

10.  Counting clusters using R-NN curves.

Authors:  Rajarshi Guha; Debojyoti Dutta; David J Wild; Ting Chen
Journal:  J Chem Inf Model       Date:  2007-06-30       Impact factor: 4.956

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