Literature DB >> 11717396

Structure of a quinohemoprotein amine dehydrogenase with an uncommon redox cofactor and highly unusual crosslinking.

S Datta1, Y Mori, K Takagi, K Kawaguchi, Z W Chen, T Okajima, S Kuroda, T Ikeda, K Kano, K Tanizawa, F S Mathews.   

Abstract

The crystal structure of the heterotrimeric quinohemoprotein amine dehydrogenase from Paracoccus denitrificans has been determined at 2.05-A resolution. Within an 82-residue subunit is contained an unusual redox cofactor, cysteine tryptophylquinone (CTQ), consisting of an orthoquinone-modified tryptophan side chain covalently linked to a nearby cysteine side chain. The subunit is surrounded on three sides by a 489-residue, four-domain subunit that includes a diheme cytochrome c. Both subunits sit on the surface of a third subunit, a 337-residue seven-bladed beta-propeller that forms part of the enzyme active site. The small catalytic subunit is internally crosslinked by three highly unusual covalent cysteine to aspartic or glutamic acid thioether linkages in addition to the cofactor crossbridge. The catalytic function of the enzyme as well as the biosynthesis of the unusual catalytic subunit is discussed.

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Year:  2001        PMID: 11717396      PMCID: PMC64671          DOI: 10.1073/pnas.241429098

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  32 in total

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-03-01

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Journal:  Science       Date:  1990-05-25       Impact factor: 47.728

3.  Catalytic mechanism of the quinoenzyme amine oxidase from Escherichia coli: exploring the reductive half-reaction.

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Journal:  Biochemistry       Date:  1997-02-18       Impact factor: 3.162

4.  Miscellaneous algorithms for density modification.

Authors:  K Cowtan; P Main
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-07-01

5.  The iron sulfur protein AtsB is required for posttranslational formation of formylglycine in the Klebsiella sulfatase.

Authors:  C Szameit; C Miech; M Balleininger; B Schmidt; K von Figura; T Dierks
Journal:  J Biol Chem       Date:  1999-05-28       Impact factor: 5.157

6.  Biochemical and electrochemical characterization of quinohemoprotein amine dehydrogenase from Paracoccus denitrificans.

Authors:  K Takagi; M Torimura; K Kawaguchi; K Kano; T Ikeda
Journal:  Biochemistry       Date:  1999-05-25       Impact factor: 3.162

7.  Refined crystal structure of methylamine dehydrogenase from Paracoccus denitrificans at 1.75 A resolution.

Authors:  L Chen; M Doi; R C Durley; A Y Chistoserdov; M E Lidstrom; V L Davidson; F S Mathews
Journal:  J Mol Biol       Date:  1998-02-13       Impact factor: 5.469

Review 8.  Quinoprotein-catalysed reactions.

Authors:  C Anthony
Journal:  Biochem J       Date:  1996-12-15       Impact factor: 3.857

9.  Automated MAD and MIR structure solution.

Authors:  T C Terwilliger; J Berendzen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-04

10.  Mutants of Methylobacterium extorquens and Paracoccus denitrificans deficient in c-type cytochrome biogenesis synthesise the methylamine-dehydrogenase polypeptides but cannot assemble the tryptophan-tryptophylquinone group.

Authors:  M D Page; S J Ferguson
Journal:  Eur J Biochem       Date:  1993-12-01
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  40 in total

1.  How many ways to craft a cofactor?

Authors:  J P Klinman
Journal:  Proc Natl Acad Sci U S A       Date:  2001-12-18       Impact factor: 11.205

2.  An unusual subtilisin-like serine protease is essential for biogenesis of quinohemoprotein amine dehydrogenase.

Authors:  Tadashi Nakai; Kazutoshi Ono; Shun'ichi Kuroda; Katsuyuki Tanizawa; Toshihide Okajima
Journal:  J Biol Chem       Date:  2012-01-10       Impact factor: 5.157

3.  Two Different Quinohemoprotein Amine Dehydrogenases Initiate Anaerobic Degradation of Aromatic Amines in Aromatoleum aromaticum EbN1.

Authors:  Georg Schmitt; Martin Saft; Fabian Arndt; Jörg Kahnt; Johann Heider
Journal:  J Bacteriol       Date:  2019-07-24       Impact factor: 3.490

4.  Moving Through Barriers in Science and Life.

Authors:  Judith P Klinman
Journal:  Annu Rev Biochem       Date:  2019-06-20       Impact factor: 23.643

5.  Roles of Copper and a Conserved Aspartic Acid in the Autocatalytic Hydroxylation of a Specific Tryptophan Residue during Cysteine Tryptophylquinone Biogenesis.

Authors:  Heather R Williamson; Esha Sehanobish; Alan M Shiller; Antonio Sanchez-Amat; Victor L Davidson
Journal:  Biochemistry       Date:  2017-02-10       Impact factor: 3.162

6.  Kinetic and structural evidence that Asp-678 plays multiple roles in catalysis by the quinoprotein glycine oxidase.

Authors:  Kyle J Mamounis; Dante Avalos; Erik T Yukl; Victor L Davidson
Journal:  J Biol Chem       Date:  2019-10-15       Impact factor: 5.157

7.  Spectroscopic and Electrochemical Characterization of the Mycofactocin Biosynthetic Protein, MftC, Provides Insight into Its Redox Flipping Mechanism.

Authors:  Richard Ayikpoe; Thacien Ngendahimana; Michelle Langton; Sheila Bonitatibus; Lindsey M Walker; Sandra S Eaton; Gareth R Eaton; Maria-Eirini Pandelia; Sean J Elliott; John A Latham
Journal:  Biochemistry       Date:  2019-01-25       Impact factor: 3.162

8.  Crystal structure of a novel polyisoprenoid-binding protein from Thermus thermophilus HB8.

Authors:  Noriko Handa; Takaho Terada; Yukiko Doi-Katayama; Hiroshi Hirota; Jeremy R H Tame; Sam-Yong Park; Seiki Kuramitsu; Mikako Shirouzu; Shigeyuki Yokoyama
Journal:  Protein Sci       Date:  2005-03-01       Impact factor: 6.725

9.  Bioinformatic Mapping of Radical S-Adenosylmethionine-Dependent Ribosomally Synthesized and Post-Translationally Modified Peptides Identifies New Cα, Cβ, and Cγ-Linked Thioether-Containing Peptides.

Authors:  Graham A Hudson; Brandon J Burkhart; Adam J DiCaprio; Christopher J Schwalen; Bryce Kille; Taras V Pogorelov; Douglas A Mitchell
Journal:  J Am Chem Soc       Date:  2019-05-13       Impact factor: 15.419

10.  Steady-state kinetic mechanism of LodA, a novel cysteine tryptophylquinone-dependent oxidase.

Authors:  Esha Sehanobish; Sooim Shin; Antonio Sanchez-Amat; Victor L Davidson
Journal:  FEBS Lett       Date:  2014-01-23       Impact factor: 4.124

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